diff test-data/gstacks/gstacks.log.distribs @ 0:ad7a60726fc3 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/gstacks/gstacks.log.distribs	Mon Jul 01 11:02:39 2019 -0400
@@ -0,0 +1,43 @@
+# Note: Individual distributions can be extracted using the `stacks-dist-extract` utility.
+#       e.g. `stacks-dist-extract gstacks.log.distribs dist_name`
+
+BEGIN effective_coverages_per_sample
+# For mean_cov_ns, the coverage at each locus is weighted by the number of
+# samples present at that locus (i.e. coverage at shared loci counts more).
+sample	n_loci	n_used_fw_reads	mean_cov	mean_cov_ns
+PopA_01	3	96	32.000	32.000
+PopA_02	3	90	30.000	30.000
+END effective_coverages_per_sample
+
+BEGIN phasing_rates_per_sample
+sample	n_gts	n_multisnp_hets	n_phased	misphasing_rate
+PopA_01	3	2	2	0.000
+PopA_02	3	3	3	0.000
+END phasing_rates_per_sample
+
+BEGIN clockings
+Num. threads: 1
+Parallel time: 0.0
+Average thread time spent:
+     0.0  reading (3.1%)
+     0.0  processing (95.2%)
+             0.0 pre-alignments block (72.2%)
+             0.0  reformatting fw-reads (0.1%)
+             0.0  assembling (22.2%)
+             0.0  initializing alignments (5.4%)
+             0.0  aligning (42.9%)
+             0.0  merging read pairs (1.5%)
+             0.0 post-alignments block (21.2%)
+             0.0  filtering reads (0.0%)
+             0.0  counting nucleotides (3.5%)
+             0.0  genotyping (1.9%)
+             0.0  haplotyping (1.0%)
+             0.0  computing consensus (0.1%)
+             0.0  building_fa (0.1%)
+             0.0  building_vcf (14.6%)
+     0.0  writing_fa (0.1%)
+     0.0  writing_vcf (1.3%)
+     0.0  clocking (0.2%)
+Total time spent writing vcf: 0.0 (1.3%)
+VCFwrite block size: mean=1.0(n=3); max=1
+END clockings