Mercurial > repos > iuc > stacks2_shortreads
diff test-data/populations/populations.log.distribs @ 0:ad7a60726fc3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
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| date | Mon, 01 Jul 2019 11:02:39 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/populations/populations.log.distribs Mon Jul 01 11:02:39 2019 -0400 @@ -0,0 +1,42 @@ +# Note: Individual distributions can be extracted using the `stacks-dist-extract` utility. +# e.g. `stacks-dist-extract populations.log.distribs dist_name` + +BEGIN batch_progress +Batch 1: analyzed 3 loci; filtered 0 loci; 3 loci seen. +END batch_progress + +BEGIN samples_per_loc_prefilters +# Distribution of valid samples matched to a catalog locus prior to filtering. +n_samples n_loci +2 3 +END samples_per_loc_prefilters + +BEGIN missing_samples_per_loc_prefilters +# Distribution of missing samples for each catalog locus prior to filtering. +# Absent samples at locus Count +0 3 +END missing_samples_per_loc_prefilters + +BEGIN snps_per_loc_prefilters +# Distribution of the number of SNPs per catalog locus prior to filtering. +n_snps n_loci +2 3 +END snps_per_loc_prefilters + +BEGIN samples_per_loc_postfilters +# Distribution of valid samples matched to a catalog locus after filtering. +n_samples n_loci +2 3 +END samples_per_loc_postfilters + +BEGIN missing_samples_per_loc_postfilters +# Distribution of missing samples for each catalog locus after filtering. +# Absent samples at locus Count +0 3 +END missing_samples_per_loc_postfilters + +BEGIN snps_per_loc_postfilters +# Distribution of the number of SNPs per catalog locus (after filtering). +n_snps n_loci +2 3 +END snps_per_loc_postfilters