Mercurial > repos > iuc > stacks2_shortreads
diff test-data/procrad/process_radtags_paired.out @ 0:ad7a60726fc3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
author | iuc |
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date | Mon, 01 Jul 2019 11:02:39 -0400 |
parents | |
children | 4e280b27a831 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/procrad/process_radtags_paired.out Mon Jul 01 11:02:39 2019 -0400 @@ -0,0 +1,55 @@ +process_radtags v2.2, executed 2018-11-23 13:35:34 +process_radtags -p stacks_inputs/ --paired -i fastq -b /tmp/tmp2_xu5h/files/000/dataset_91.dat --len_limit 50 -D -y gzfasta --inline_null -e ecoRI -o stacks_outputs +File Retained Reads Low Quality Barcode Not Found RAD cutsite Not Found Total +reads_R1_0.fastq 9222 0 0 4778 14000 + +Total Sequences 14000 +Barcode Not Found 0 +Low Quality 0 +RAD Cutsite Not Found 4778 +Retained Reads 9222 + +Barcode Filename Total NoRadTag LowQuality Retained +ATGGGG PopA_01 320 94 0 226 +GGGTAA PopA_02 292 86 0 206 +AGGAAA PopA_03 448 132 0 316 +TTTAAG PopA_04 336 146 0 190 +GGTGTG PopA_05 440 154 0 286 +TGATGT PopA_06 428 147 0 281 +GGTTGT PopA_07 364 137 0 227 +ATAAGT PopA_08 464 164 0 300 +AAGATA PopA_09 364 134 0 230 +TGTGAG PopA_10 336 128 0 208 +ATAGTT PopA_11 400 132 0 268 +GGAAGG PopA_12 356 136 0 220 +TTTGTG PopA_13 380 152 0 228 +TTAAAT PopA_14 332 96 0 236 +AATAAG PopA_15 304 74 0 230 +AAGAGG PopA_16 348 112 0 236 +TAGTGT PopA_17 484 146 0 338 +TGGAAG PopA_18 296 98 0 198 +GGGTTG PopA_19 220 64 0 156 +CATCAT PopA_20 356 144 0 212 +GGAGAG PopB_20 420 142 0 278 +GTTTTA PopB_01 272 90 0 182 +TGATAA PopB_02 332 108 0 224 +GTTGAT PopB_03 296 74 0 222 +AGATTA PopB_04 360 156 0 204 +GTATAG PopB_05 272 106 0 166 +TTGGGA PopB_06 332 112 0 220 +ATATAT PopB_07 484 156 0 328 +GATGAG PopB_08 416 152 0 264 +GGGAAT PopB_09 396 126 0 270 +AGTAAT PopB_10 328 120 0 208 +GGGATA PopB_11 292 90 0 202 +GAGAAG PopB_12 324 110 0 214 +AGTAGA PopB_13 408 146 0 262 +AAGGAT PopB_14 360 128 0 232 +AGGGTA PopB_15 268 72 0 196 +TGTTTT PopB_16 276 98 0 178 +ATGATG PopB_17 284 100 0 184 +GAGTTA PopB_18 320 112 0 208 +ATGTAG PopB_19 292 104 0 188 + +Sequences not recorded +Barcode Total