Mercurial > repos > iuc > stacks2_shortreads
diff test-data/tsv2bam/tsv2bam.log @ 0:ad7a60726fc3 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 11:02:39 -0400 |
| parents | |
| children | 43e3eeb2e0ec |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tsv2bam/tsv2bam.log Mon Jul 01 11:02:39 2019 -0400 @@ -0,0 +1,17 @@ +tsv2bam v2.4, executed 2019-06-17 21:22:16 (zlib-1.2.11) +tsv2bam -P stacks_outputs -M denovo_map/popmap_cstacks.tsv -R demultiplexed/ +Configuration for this run: + Stacks directory: 'stacks_outputs/' + Population map: 'denovo_map/popmap_cstacks.tsv' + Num. samples: 2 + Paired-end reads directory: 'demultiplexed/' + +Paired-end reads files found, e.g. 'demultiplexed/PopA_01.2.fq'. +Loading the catalog... +Processing sample 'PopA_01'... +Processing sample 'PopA_02'... + +Sample 'PopA_01': matched 3 sample loci to 3 catalog loci; found a paired-end read for 66 (100.0%) of the assembled forward reads; wrote 132 records. +Sample 'PopA_02': matched 3 sample loci to 3 catalog loci; found a paired-end read for 60 (100.0%) of the assembled forward reads; wrote 120 records. + +tsv2bam is done.