Mercurial > repos > iuc > stacks2_sstacks
comparison macros.xml @ 6:9586f08634c0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 2f4c9bfc48d63075ae18a1687e8d01ffea509084
author | iuc |
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date | Wed, 11 May 2022 06:51:14 +0000 |
parents | 09b8edb56d80 |
children | a819ec3b362d |
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5:09b8edb56d80 | 6:9586f08634c0 |
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8 <yield/> | 8 <yield/> |
9 </requirements> | 9 </requirements> |
10 </xml> | 10 </xml> |
11 | 11 |
12 <token name="@TOOL_VERSION@">2.55</token> | 12 <token name="@TOOL_VERSION@">2.55</token> |
13 <token name="@VERSION_SUFFIX@">2</token> | 13 <token name="@VERSION_SUFFIX@">3</token> |
14 <token name="@PROFILE@">20.05</token> | 14 <token name="@PROFILE@">20.05</token> |
15 | 15 |
16 <xml name="citation"> | 16 <xml name="citation"> |
17 <citations> | 17 <citations> |
18 <citation type="doi">10.1111/mec.12354</citation> | 18 <citation type="doi">10.1111/mec.12354</citation> |
630 <option value="--index_index">@TYPE@ is provded in FASTQ header (Illumina i5 and i7 reads) (--index_index)</option> | 630 <option value="--index_index">@TYPE@ is provded in FASTQ header (Illumina i5 and i7 reads) (--index_index)</option> |
631 <option value="--inline_index">@TYPE@ is inline with sequence on single-end read and occurs in FASTQ header (from either i5 or i7 read) (--inline_index)</option> | 631 <option value="--inline_index">@TYPE@ is inline with sequence on single-end read and occurs in FASTQ header (from either i5 or i7 read) (--inline_index)</option> |
632 <option value="--index_inline">@TYPE@ occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data) (--index_inline)</option> | 632 <option value="--index_inline">@TYPE@ occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data) (--index_inline)</option> |
633 </expand> | 633 </expand> |
634 </xml> | 634 </xml> |
635 <!-- for tests that check the output for "stacks completed" --> | |
636 <xml name="test_element_stacks_completed" token_element_name=""> | |
637 <element name="@ELEMENT_NAME@"><assert_contents><has_text text="stacks completed on" /></assert_contents></element> | |
638 </xml> | |
635 </macros> | 639 </macros> |