Mercurial > repos > iuc > stacks2_sstacks
comparison stacks_sstacks.xml @ 1:e58e2ecb6285 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit c300b84615660459bb0020fa74ccd3b874d329a4"
author | iuc |
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date | Mon, 30 Sep 2019 14:14:39 -0400 |
parents | b7babdb3c219 |
children | 0b8c84a7fdb5 |
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0:b7babdb3c219 | 1:e58e2ecb6285 |
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79 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" /> | 79 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" /> |
80 <param name="add_log" value="yes" /> | 80 <param name="add_log" value="yes" /> |
81 <assert_command> | 81 <assert_command> |
82 <not_has_text text="-x" /> | 82 <not_has_text text="-x" /> |
83 <not_has_text text="--disable-gapped" /> | 83 <not_has_text text="--disable-gapped" /> |
84 <not_has_text text="-M" /> | 84 <has_text text="-M" /> |
85 </assert_command> | 85 </assert_command> |
86 <output name="output_log" ftype="txt" file="sstacks/sstacks.log"/> | 86 <output name="output_log" ftype="txt" file="sstacks/sstacks.log"/> |
87 <output_collection name="matches" type="list"> | 87 <output_collection name="matches" type="list"> |
88 <element name="PopA_01.matches" file="sstacks/PopA_01.matches.tsv" ftype="tabular" lines_diff="2"/> | 88 <element name="PopA_01.matches" file="sstacks/PopA_01.matches.tsv" ftype="tabular" lines_diff="2"/> |
89 <element name="PopA_02.matches" file="sstacks/PopA_02.matches.tsv" ftype="tabular" lines_diff="2"/> | 89 <element name="PopA_02.matches" file="sstacks/PopA_02.matches.tsv" ftype="tabular" lines_diff="2"/> |
144 <param name="x" value="-x" /> | 144 <param name="x" value="-x" /> |
145 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" /> | 145 <param name="popmap" ftype="tabular" value="denovo_map/popmap_cstacks.tsv" /> |
146 <param name="add_log" value="yes" /> | 146 <param name="add_log" value="yes" /> |
147 <assert_command> | 147 <assert_command> |
148 <has_text text="-x" /> | 148 <has_text text="-x" /> |
149 <has_text text="--disable-gapped" /> | 149 <not_has_text text="--disable-gapped" /> |
150 <has_text text="-M" /> | 150 <has_text text="-M" /> |
151 </assert_command> | 151 </assert_command> |
152 <output name="output_log" ftype="txt"><assert_contents><has_text text="done." /></assert_contents></output> | 152 <output name="output_log" ftype="txt"><assert_contents><has_text text="done." /></assert_contents></output> |
153 <output_collection name="matches" type="list" count="2"> | 153 <output_collection name="matches" type="list" count="2"> |
154 <element name="PopA_01.matches"><assert_contents><has_text text="generated on " /></assert_contents></element> | 154 <element name="PopA_01.matches"><assert_contents><has_text text="generated on " /></assert_contents></element> |