Mercurial > repos > iuc > stacks2_tsv2bam
comparison stacks_tsv2bam.xml @ 5:a4b4bd84f69e draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author | iuc |
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date | Thu, 14 Apr 2022 09:29:04 +0000 |
parents | 69842dd5aa48 |
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4:69842dd5aa48 | 5:a4b4bd84f69e |
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1 <tool id="stacks2_tsv2bam" name="Stacks2: tsv2bam" profile="@PROFILE@" version="@STACKS_VERSION@+galaxy@WRAPPER_VERSION@"> | 1 <tool id="stacks2_tsv2bam" name="Stacks2: tsv2bam" profile="@PROFILE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"> |
2 <description>Sort reads by RAD locus</description> | 2 <description>Sort reads by RAD locus</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements"> | 6 <expand macro="requirements"> |
58 <inputs> | 58 <inputs> |
59 <expand macro="input_stacks_macro"/> | 59 <expand macro="input_stacks_macro"/> |
60 <expand macro="input_cat_macro"/> | 60 <expand macro="input_cat_macro"/> |
61 <expand macro="input_matches_macro"/> | 61 <expand macro="input_matches_macro"/> |
62 <!-- TODO add BAM? --> | 62 <!-- TODO add BAM? --> |
63 <expand macro="fastq_input" fastq_optional="true" se_option="reverse reads" help="Paired end data or reverse reads. If a paired list is provided only the reverse reads are used in tsv2bam. Leave selection empty if you analyse single end data."/> | 63 <expand macro="fastq_input" fastq_optional="true" multiple="true" listtype="list:paired" se_option="reverse reads" help="Paired end data or reverse reads. If a paired list is provided only the reverse reads are used in tsv2bam. Leave selection empty if you analyse single end data."/> |
64 <param name="popmap" type="data" format="tabular,txt" label="Population map" help="If set, matching will be done only for samples listed in this file" optional="true" argument="-M"/> | 64 <param name="popmap" type="data" format="tabular,txt" label="Population map" help="If set, matching will be done only for samples listed in this file" optional="true" argument="-M"/> |
65 <expand macro="in_log"/> | 65 <expand macro="in_log"/> |
66 </inputs> | 66 </inputs> |
67 | 67 |
68 <outputs> | 68 <outputs> |