Mercurial > repos > iuc > stacks2_tsv2bam

comparison test-data/shortreads/process_shortreads.out @ 5:a4b4bd84f69e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit 16654f3b3faaba994cea5fda8d4907ea4f059605"
author iuc
date Thu, 14 Apr 2022 09:29:04 +0000
parents bf0e43ab0416
children
comparison
equal deleted inserted replaced
4:69842dd5aa48 5:a4b4bd84f69e
1 process_shortreads v2.53, executed 2020-07-10 13:51:53 (zlib-1.2.11) 1 process_shortreads v2.55, executed 2022-01-05 15:53:50 (zlib-1.2.11)
2 process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmpidt4mij_/files/7/7/8/dataset_778705df-5f0c-4210-9ad6-4c43e8aacd52.dat --inline_null -o stacks_outputs 2 process_shortreads -p stacks_inputs/ -i fastq -b /tmp/tmplyzlyqbv/files/4/1/2/dataset_412528b4-0c03-422a-93ff-0020f0e11824.dat --inline_null -o stacks_outputs
3 File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total 3 File Retained Reads Low Quality Ambiguous Barcodes Trimmed Reads Orphaned paired-end reads Total
4 R1.fastq 7000 0 0 0 0 7000 4 R1_01.fastq 2176 0 0 0 0 2176
5 R1_02.fastq 2175 0 0 0 0 2175
6 R1_03.fastq 2176 0 0 0 0 2176
7 R1_04.fastq 470 0 0 0 0 470
5 8
6 Total Sequences 7000 9 Total Sequences 6997
7 Ambiguous Barcodes 0 10 Ambiguous Barcodes 0
8 Low Quality 0 11 Low Quality 0
9 Trimmed Reads 0 12 Trimmed Reads 0
10 Orphaned Paired-ends 0 13 Orphaned Paired-ends 0
11 Retained Reads 7000 14 Retained Reads 6997
12 15
13 Barcode Filename Total Retained 16 Barcode Filename Total Retained
14 ATGGGG PopA_01 160 160 17 ATGGGG PopA_01 160 160
15 GGGTAA PopA_02 146 146 18 GGGTAA PopA_02 146 146
16 AGGAAA PopA_03 224 224 19 AGGAAA PopA_03 224 224
21 ATAAGT PopA_08 232 232 24 ATAAGT PopA_08 232 232
22 AAGATA PopA_09 182 182 25 AAGATA PopA_09 182 182
23 TGTGAG PopA_10 168 168 26 TGTGAG PopA_10 168 168
24 ATAGTT PopA_11 200 200 27 ATAGTT PopA_11 200 200
25 GGAAGG PopA_12 178 178 28 GGAAGG PopA_12 178 178
26 TTTGTG PopA_13 190 190 29 TTTGTG PopA_13 189 189
27 TTAAAT PopA_14 166 166 30 TTAAAT PopA_14 166 166
28 AATAAG PopA_15 152 152 31 AATAAG PopA_15 152 152
29 AAGAGG PopA_16 174 174 32 AAGAGG PopA_16 174 174
30 TAGTGT PopA_17 242 242 33 TAGTGT PopA_17 242 242
31 TGGAAG PopA_18 148 148 34 TGGAAG PopA_18 148 148
41 ATATAT PopB_07 242 242 44 ATATAT PopB_07 242 242
42 GATGAG PopB_08 208 208 45 GATGAG PopB_08 208 208
43 GGGAAT PopB_09 198 198 46 GGGAAT PopB_09 198 198
44 AGTAAT PopB_10 164 164 47 AGTAAT PopB_10 164 164
45 GGGATA PopB_11 146 146 48 GGGATA PopB_11 146 146
46 GAGAAG PopB_12 162 162 49 GAGAAG PopB_12 161 161
47 AGTAGA PopB_13 204 204 50 AGTAGA PopB_13 204 204
48 AAGGAT PopB_14 180 180 51 AAGGAT PopB_14 180 180
49 AGGGTA PopB_15 134 134 52 AGGGTA PopB_15 134 134
50 TGTTTT PopB_16 138 138 53 TGTTTT PopB_16 138 138
51 ATGATG PopB_17 142 142 54 ATGATG PopB_17 142 142
52 GAGTTA PopB_18 160 160 55 GAGTTA PopB_18 159 159
53 ATGTAG PopB_19 146 146 56 ATGTAG PopB_19 146 146
54 57
55 Sequences not recorded 58 Sequences not recorded
56 Barcode Total 59 Barcode Total