Mercurial > repos > iuc > stacks2_tsv2bam
view test-data/cstacks/cstacks.log @ 0:1b270fc77c81 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit b395fa36fa826e26085820ba3a9faacaeddcb460
| author | iuc |
|---|---|
| date | Mon, 01 Jul 2019 10:59:53 -0400 |
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cstacks parameters selected: Loci matched based on sequence identity. Number of mismatches allowed between stacks: 1 Gapped alignments: enabled Constructing catalog from 2 samples. Initializing new catalog... Parsing stacks_inputs/PopA_01.tags.tsv Parsing stacks_inputs/PopA_01.snps.tsv Parsing stacks_inputs/PopA_01.alleles.tsv 3 loci were newly added to the catalog. Processing sample stacks_inputs/PopA_02 [2 of 2] Parsing stacks_inputs/PopA_02.tags.tsv Parsing stacks_inputs/PopA_02.snps.tsv Parsing stacks_inputs/PopA_02.alleles.tsv Searching for sequence matches... 3 loci in the catalog, 184 kmers in the catalog hash. Searching for gapped alignments... Merging matches into catalog... 3 loci were matched to a catalog locus. 0 loci were matched to a catalog locus using gapped alignments. 0 loci were newly added to the catalog. 0 loci matched more than one catalog locus, linking them. 0 linked catalog loci were merged into 0 loci. Writing catalog in directory 'stacks_inputs/'. Final catalog contains 3 loci. cstacks is done.