diff test-data/denovo_map/denovo_map.log @ 2:d033e1ccb386 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks2 commit f55e2407891a3c1f73f14a77b7ddadcd6f5eb1f8"

--- a/test-data/denovo_map/denovo_map.log	Mon Sep 30 14:16:43 2019 -0400
+++ b/test-data/denovo_map/denovo_map.log	Thu Jul 16 07:31:44 2020 -0400
@@ -1,5 +1,5 @@
-denovo_map.pl version 2.4 started at 2019-06-18 10:34:45
-/home/berntm/miniconda3/envs/mulled-v1-2b57e7596f85ebb3b321e6c9681e8fd9250523a80d97945c46ac7743359454e7/bin/denovo_map.pl --samples demultiplexed --popmap denovo_map/popmap_cstacks.tsv -o stacks_outputs --paired
+denovo_map.pl version 2.52 started at 2020-03-16 15:39:40
+/home/berntm/miniconda3/envs/__stacks@2.52/bin/denovo_map.pl --samples demultiplexed --popmap denovo_map/popmap_cstacks.tsv -o stacks_outputs --paired
 
 ustacks
 ==========
@@ -110,7 +110,7 @@
 
 cstacks
 ==========
-cstacks -P stacks_outputs -M denovo_map/popmap_cstacks.tsv
+cstacks -M denovo_map/popmap_cstacks.tsv -P stacks_outputs
 
 cstacks parameters selected:
   Loci matched based on sequence identity.
@@ -279,8 +279,7 @@
 Working on 1 group(s) of populations:
     defaultgrp: 1
 
-Genotyping markers will be written to 'stacks_outputs/populations.markers.tsv'
-Raw Genotypes/Haplotypes will be written to 'stacks_outputs/populations.haplotypes.tsv'
+Raw haplotypes will be written to 'stacks_outputs/populations.haplotypes.tsv'
 Population-level summary statistics will be written to 'stacks_outputs/populations.sumstats.tsv'
 Population-level haplotype summary statistics will be written to 'stacks_outputs/populations.hapstats.tsv'
 
@@ -306,4 +305,4 @@
 Populations is done.
 denovo_map.pl is done.
 
-denovo_map.pl completed at 2019-06-18 10:34:45
+denovo_map.pl completed at 2020-03-16 15:39:40