Mercurial > repos > iuc > stacks_clonefilter
comparison stacks_clonefilter.xml @ 4:60d86dc1b19d draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
author | iuc |
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date | Fri, 07 Apr 2023 21:59:58 +0000 (20 months ago) |
parents | 3009a21724e7 |
children |
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3:3009a21724e7 | 4:60d86dc1b19d |
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1 <tool id="stacks_clonefilter" name="Stacks: clone filter" version="@WRAPPER_VERSION@.0"> | 1 <tool id="stacks_clonefilter" name="Stacks: clone filter" version="@WRAPPER_VERSION@.0"> |
2 <description>Identify PCR clones</description> | 2 <description>Identify PCR clones</description> |
3 <expand macro="bio_tools"/> | |
4 <macros> | 3 <macros> |
5 <import>macros.xml</import> | 4 <import>macros.xml</import> |
6 </macros> | 5 </macros> |
6 <expand macro="bio_tools"/> | |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <expand macro="stdio"/> | 8 <expand macro="stdio"/> |
9 <command><![CDATA[ | 9 <command><![CDATA[ |
10 | 10 |
11 #if $data_type.dt_select == "single" | 11 #if $data_type.dt_select == "single" |
91 <outputs> | 91 <outputs> |
92 <data format="fastqsanger.gz" name="clean" from_work_dir="clone_outputs/R1.fq.gz"> | 92 <data format="fastqsanger.gz" name="clean" from_work_dir="clone_outputs/R1.fq.gz"> |
93 <filter>data_type['dt_select'] == 'single'</filter> | 93 <filter>data_type['dt_select'] == 'single'</filter> |
94 </data> | 94 </data> |
95 | 95 |
96 <data format="fastqsanger.gz" name="clean_fwd" from_work_dir="clone_outputs/R1.1.fq.gz"> | 96 <data format="fastqsanger.gz" name="clean_fwd" from_work_dir="clone_outputs/R1.1.fq.gz" label="${tool.name} on ${on_string}: forward"> |
97 <filter>data_type['dt_select'] == 'pair'</filter> | 97 <filter>data_type['dt_select'] == 'pair'</filter> |
98 </data> | 98 </data> |
99 <data format="fastqsanger.gz" name="clean_rev" from_work_dir="clone_outputs/R2.2.fq.gz"> | 99 <data format="fastqsanger.gz" name="clean_rev" from_work_dir="clone_outputs/R2.2.fq.gz" label="${tool.name} on ${on_string}: reverse"> |
100 <filter>data_type['dt_select'] == 'pair'</filter> | 100 <filter>data_type['dt_select'] == 'pair'</filter> |
101 </data> | 101 </data> |
102 </outputs> | 102 </outputs> |
103 <tests> | 103 <tests> |
104 <test> | 104 <test> |