comparison stacks_clonefilter.xml @ 4:60d86dc1b19d draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
author iuc
date Fri, 07 Apr 2023 21:59:58 +0000 (20 months ago)
parents 3009a21724e7
children
comparison
equal deleted inserted replaced
3:3009a21724e7 4:60d86dc1b19d
1 <tool id="stacks_clonefilter" name="Stacks: clone filter" version="@WRAPPER_VERSION@.0"> 1 <tool id="stacks_clonefilter" name="Stacks: clone filter" version="@WRAPPER_VERSION@.0">
2 <description>Identify PCR clones</description> 2 <description>Identify PCR clones</description>
3 <expand macro="bio_tools"/>
4 <macros> 3 <macros>
5 <import>macros.xml</import> 4 <import>macros.xml</import>
6 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <expand macro="stdio"/> 8 <expand macro="stdio"/>
9 <command><![CDATA[ 9 <command><![CDATA[
10 10
11 #if $data_type.dt_select == "single" 11 #if $data_type.dt_select == "single"
91 <outputs> 91 <outputs>
92 <data format="fastqsanger.gz" name="clean" from_work_dir="clone_outputs/R1.fq.gz"> 92 <data format="fastqsanger.gz" name="clean" from_work_dir="clone_outputs/R1.fq.gz">
93 <filter>data_type['dt_select'] == 'single'</filter> 93 <filter>data_type['dt_select'] == 'single'</filter>
94 </data> 94 </data>
95 95
96 <data format="fastqsanger.gz" name="clean_fwd" from_work_dir="clone_outputs/R1.1.fq.gz"> 96 <data format="fastqsanger.gz" name="clean_fwd" from_work_dir="clone_outputs/R1.1.fq.gz" label="${tool.name} on ${on_string}: forward">
97 <filter>data_type['dt_select'] == 'pair'</filter> 97 <filter>data_type['dt_select'] == 'pair'</filter>
98 </data> 98 </data>
99 <data format="fastqsanger.gz" name="clean_rev" from_work_dir="clone_outputs/R2.2.fq.gz"> 99 <data format="fastqsanger.gz" name="clean_rev" from_work_dir="clone_outputs/R2.2.fq.gz" label="${tool.name} on ${on_string}: reverse">
100 <filter>data_type['dt_select'] == 'pair'</filter> 100 <filter>data_type['dt_select'] == 'pair'</filter>
101 </data> 101 </data>
102 </outputs> 102 </outputs>
103 <tests> 103 <tests>
104 <test> 104 <test>