Mercurial > repos > iuc > stacks_cstacks
annotate test-data/populations/batch_1.vcf @ 8:759ba5c7faca draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
author | iuc |
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date | Thu, 27 Apr 2017 04:18:23 -0400 |
parents | a62f7e799494 |
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rev | line source |
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4
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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1 ##fileformat=VCFv4.2 |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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2 ##fileDate=20160926 |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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3 ##source="Stacks v1.42" |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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4 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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5 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency"> |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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8 ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Allele Depth"> |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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9 ##FORMAT=<ID=GL,Number=.,Type=Float,Description="Genotype Likelihood"> |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02 |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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11 un 35 1_33 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:6,4:.,13.18,. |
a62f7e799494
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
12 un 90 1_88 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:4,6:.,13.18,. |