Mercurial > repos > iuc > stacks_cstacks

comparison test-data/procrad/process_radtags.out @ 0:a1807de3995a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit f3a59c91c231cc1582479109e776d05602b7f24d-dirty
author iuc
date Tue, 14 Jun 2016 14:05:09 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:a1807de3995a
1 process_radtags -1 /tmp/tmpTg8Tep/files/000/dataset_1.dat -2 /tmp/tmpTg8Tep/files/000/dataset_2.dat -i fastq -b /tmp/tmpTg8Tep/files/000/dataset_3.dat --inline_null -e ecoRI -y fastq -D -w 0.15 -q -s 10 -o galaxy_outputs
2 process_radtags version 1.37 executed 2016-03-31 10:44:24
3
4 File Retained Reads Low Quality Ambiguous Barcodes Ambiguous RAD-Tag Total
5 dataset_1.dat 1767 0 0 233 2000
6
7 Total Sequences 2000
8 Ambiguous Barcodes 0
9 Low Quality 0
10 Ambiguous RAD-Tag 233
11 Retained Reads 1767
12
13 Barcode Filename Total No RadTag Low Quality Retained
14 ATGGGG PopA_01 56 0 0 56
15 GGGTAA PopA_02 84 14 0 70
16 AGGAAA PopA_03 76 22 0 54
17 TTTAAG PopA_04 52 24 0 28
18 GGTGTG PopA_05 64 10 0 54
19 TGATGT PopA_06 100 32 0 68
20 GGTTGT PopA_07 100 31 0 69
21 ATAAGT PopA_08 84 12 0 72
22 AAGATA PopA_09 68 26 0 42
23 TGTGAG PopA_10 0 0 0 0
24 ATAGTT PopA_11 52 0 0 52
25 GGAAGG PopA_12 36 0 0 36
26 TTTGTG PopA_13 44 0 0 44
27 TTAAAT PopA_14 52 0 0 52
28 AATAAG PopA_15 52 0 0 52
29 AAGAGG PopA_16 28 0 0 28
30 TAGTGT PopA_17 56 0 0 56
31 TGGAAG PopA_18 72 0 0 72
32 GGGTTG PopA_19 36 0 0 36
33 CATCAT PopA_20 76 24 0 52
34 GGAGAG PopB_20 44 0 0 44
35 GTTTTA PopB_01 20 0 0 20
36 TGATAA PopB_02 64 0 0 64
37 GTTGAT PopB_03 40 0 0 40
38 AGATTA PopB_04 20 0 0 20
39 GTATAG PopB_05 12 0 0 12
40 TTGGGA PopB_06 52 0 0 52
41 ATATAT PopB_07 40 0 0 40
42 GATGAG PopB_08 64 0 0 64
43 GGGAAT PopB_09 44 0 0 44
44 AGTAAT PopB_10 52 0 0 52
45 GGGATA PopB_11 48 0 0 48
46 GAGAAG PopB_12 28 0 0 28
47 AGTAGA PopB_13 44 0 0 44
48 AAGGAT PopB_14 64 22 0 42
49 AGGGTA PopB_15 64 0 0 64
50 TGTTTT PopB_16 8 0 0 8
51 ATGATG PopB_17 0 0 0 0
52 GAGTTA PopB_18 44 0 0 44
53 ATGTAG PopB_19 60 16 0 44
54
55 Sequences not recorded
56 Barcode Total