comparison macros.xml @ 9:2b1dd7ab69f7 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 6ecb1ddafc5575514f9929430e5452027ad02439
author iuc
date Sun, 21 May 2017 18:52:42 -0400
parents 39d2b6c1c030
children eb1e95f88e96
comparison
equal deleted inserted replaced
8:39d2b6c1c030 9:2b1dd7ab69f7
389 <when value="fixed"> 389 <when value="fixed">
390 <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/> 390 <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/>
391 </when> 391 </when>
392 </conditional> 392 </conditional>
393 </xml> 393 </xml>
394
395 <xml name="barcode_encoding_single">
396 <option value="--inline_null" selected="True">Barcode is inline with sequence</option>
397 <option value="--index_null">Barcode is provided in FASTQ header</option>
398 </xml>
399
400 <xml name="barcode_encoding_pair">
401 <option value="--inline_null" selected="True">Barcode is inline with sequence</option>
402 <option value="--null_index">random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).</option>
403 <option value="--index_null">random oligo is provded in FASTQ header (Illumina i5 or i7 read)</option>
404 <option value="--inline_inline">random oligo is inline with sequence, occurs on single and paired-end read</option>
405 <option value="--index_index">random oligo is provded in FASTQ header (Illumina i5 and i7 read)</option>
406 <option value="--inline_index">random oligo is inline with sequence on single-end read and second oligo occurs in FASTQ header</option>
407 <option value="--index_inline">random oligo occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data)</option>
408 </xml>
394 </macros> 409 </macros>