Mercurial > repos > iuc > stacks_genotypes

comparison macros.xml @ 3:aa333a0a7d5a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit e1c1550e0bd61c88ffead2b1c4f6ab7393052393
author iuc
date Sat, 25 Jun 2016 17:28:58 -0400
parents 26e7ae6adec0
children 969a09779e3c
comparison
equal deleted inserted replaced
2:dbe3901aace2 3:aa333a0a7d5a
115 && 115 &&
116 cd stacks_outputs/ && 116 cd stacks_outputs/ &&
117 ln -s batch_1.genotypes_*onemap.tsv batch_1.genotypes.onemap.tsv && 117 ln -s batch_1.genotypes_*onemap.tsv batch_1.genotypes.onemap.tsv &&
118 ln -s batch_1.genotypes_*.onemap.txt batch_1.genotypes.onemap.txt && 118 ln -s batch_1.genotypes_*.onemap.txt batch_1.genotypes.onemap.txt &&
119 ln -s batch_1.genomic_*.tsv batch_1.genomic.tsv && 119 ln -s batch_1.genomic_*.tsv batch_1.genomic.tsv &&
120 ln -s batch_1.genotypes_1.rqtl.tsv batch_1.genotypes.rqtl.tsv && 120 ln -s batch_1.genotypes_*.rqtl.tsv batch_1.genotypes.rqtl.tsv &&
121 ln -s batch_1.haplotypes_1.tsv batch_1.haplotypes.tsv && 121 ln -s batch_1.haplotypes_*.tsv batch_1.haplotypes.tsv &&
122 ln -s batch_1.genotypes_*.loc batch_1.genotypes.loc && 122 ln -s batch_1.genotypes_*.loc batch_1.genotypes.loc &&
123 ln -s batch_1.genotypes_1.txt batch_1.genotypes.txt && 123 ln -s batch_1.genotypes_*.txt batch_1.genotypes.txt &&
124 ln -s batch_1.genotypes_1.tsv batch_1.genotypes.tsv && 124 ln -s batch_1.genotypes_*[^rqtl].tsv batch_1.genotypes.tsv &&
125 cd .. 125 cd ..
126 ]]> 126 ]]>
127 </token> 127 </token>
128 128
129 <xml name="genotypes_output_light"> 129 <xml name="genotypes_output_light">