Mercurial > repos > iuc > stacks_genotypes
diff stacks_genotypes.xml @ 12:62a4b8e5e139 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
| author | iuc |
|---|---|
| date | Fri, 07 Apr 2023 22:01:52 +0000 |
| parents | 46f061f3cfeb |
| children |
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--- a/stacks_genotypes.xml Tue Mar 22 23:21:14 2022 +0000 +++ b/stacks_genotypes.xml Fri Apr 07 22:01:52 2023 +0000 @@ -1,9 +1,9 @@ <tool id="stacks_genotypes" name="Stacks: genotypes" version="@WRAPPER_VERSION@.0"> <description>analyse haplotypes or genotypes in a genetic cross ('genotypes' program)</description> - <expand macro="bio_tools"/> <macros> <import>macros.xml</import> </macros> + <expand macro="bio_tools"/> <expand macro="requirements"/> <expand macro="stdio"/> <command><![CDATA[ @@ -58,7 +58,7 @@ --corr_path '$advanced_options.manual_cor' #end if - #if $options_autocorr.corrections + #if $options_autocorr.corrections != "" -c --min_hom_seqs $options_autocorr.hom --min_het_seqs $options_autocorr.het @@ -102,7 +102,10 @@ </section> <conditional name="options_autocorr"> - <param name="corrections" argument="-c" type="boolean" checked="true" truevalue="-c" falsevalue="" label="Make automated corrections to the data" /> + <param name="corrections" argument="-c" type="select" label="Make automated corrections to the data"> + <option value="-c" selected="true">Yes</option> + <option value="">No</option> + </param> <when value="-c"> <param name="hom" argument="--min_hom_seqs" type="integer" value="5" label="Minimum number of reads required at a stack to call a homozygous genotype" /> <param name="het" argument="--min_het_seqs:" type="float" value="0.05" label="Heterozygote minor allele minimum frequency" help="below this minor allele frequency a stack is called a homozygote, above it (but below --max_het_seqs) it is called unknown" />