Mercurial > repos > iuc > stacks_procrad
annotate test-data/populations/batch_1.vcf @ 10:8fe258d72ff3 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 689ccfe1532a4de7b60fe69cd3945601d76aefb6"
author | iuc |
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date | Thu, 26 Sep 2019 10:23:32 -0400 |
parents | c2733bcc51f7 |
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rev | line source |
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4
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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1 ##fileformat=VCFv4.2 |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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2 ##fileDate=20160926 |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
3 ##source="Stacks v1.42" |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
4 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data"> |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
5 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency"> |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
8 ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Allele Depth"> |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
9 ##FORMAT=<ID=GL,Number=.,Type=Float,Description="Genotype Likelihood"> |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02 |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
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11 un 35 1_33 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:6,4:.,13.18,. |
c2733bcc51f7
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff
changeset
|
12 un 90 1_88 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:4,6:.,13.18,. |