Mercurial > repos > iuc > stacks_procrad

annotate test-data/populations/batch_1.vcf @ 8:bec1f08cdfcc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
author iuc
date Thu, 27 Apr 2017 04:19:34 -0400
parents c2733bcc51f7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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4
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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1 ##fileformat=VCFv4.2
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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2 ##fileDate=20160926
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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3 ##source="Stacks v1.42"
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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4 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
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5 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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8 ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Allele Depth">
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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9 ##FORMAT=<ID=GL,Number=.,Type=Float,Description="Genotype Likelihood">
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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11 un 35 1_33 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:6,4:.,13.18,.
c2733bcc51f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
12 un 90 1_88 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:4,6:.,13.18,.