Mercurial > repos > iuc > stacks_pstacks
comparison macros.xml @ 9:7ebc7d229deb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 6ecb1ddafc5575514f9929430e5452027ad02439
author | iuc |
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date | Sun, 21 May 2017 18:53:58 -0400 |
parents | f42f9ae6d109 |
children | ede5223bc7f1 |
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8:f42f9ae6d109 | 9:7ebc7d229deb |
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389 <when value="fixed"> | 389 <when value="fixed"> |
390 <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/> | 390 <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/> |
391 </when> | 391 </when> |
392 </conditional> | 392 </conditional> |
393 </xml> | 393 </xml> |
394 | |
395 <xml name="barcode_encoding_single"> | |
396 <option value="--inline_null" selected="True">Barcode is inline with sequence</option> | |
397 <option value="--index_null">Barcode is provided in FASTQ header</option> | |
398 </xml> | |
399 | |
400 <xml name="barcode_encoding_pair"> | |
401 <option value="--inline_null" selected="True">Barcode is inline with sequence</option> | |
402 <option value="--null_index">random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).</option> | |
403 <option value="--index_null">random oligo is provded in FASTQ header (Illumina i5 or i7 read)</option> | |
404 <option value="--inline_inline">random oligo is inline with sequence, occurs on single and paired-end read</option> | |
405 <option value="--index_index">random oligo is provded in FASTQ header (Illumina i5 and i7 read)</option> | |
406 <option value="--inline_index">random oligo is inline with sequence on single-end read and second oligo occurs in FASTQ header</option> | |
407 <option value="--index_inline">random oligo occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data)</option> | |
408 </xml> | |
394 </macros> | 409 </macros> |