Mercurial > repos > iuc > stacks_pstacks
comparison macros.xml @ 12:a9ff3d0184b8 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
| author | iuc |
|---|---|
| date | Fri, 07 Apr 2023 22:01:24 +0000 |
| parents | 67cbd80b83f5 |
| children |
comparison
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| 11:67cbd80b83f5 | 12:a9ff3d0184b8 |
|---|---|
| 341 <option value="snp" selected="true">SNP</option> | 341 <option value="snp" selected="true">SNP</option> |
| 342 <option value="bounded">Bounded SNP</option> | 342 <option value="bounded">Bounded SNP</option> |
| 343 <option value="fixed">Fixed</option> | 343 <option value="fixed">Fixed</option> |
| 344 </param> | 344 </param> |
| 345 <when value="snp"> | 345 <when value="snp"> |
| 346 <param name="alpha" argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > | 346 <param argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > |
| 347 <option value="0.1">0.1</option> | 347 <option value="0.1">0.1</option> |
| 348 <option value="0.05" selected="True">0.05</option> | 348 <option value="0.05" selected="True">0.05</option> |
| 349 <option value="0.01">0.01</option> | 349 <option value="0.01">0.01</option> |
| 350 <option value="0.001">0.001</option> | 350 <option value="0.001">0.001</option> |
| 351 </param> | 351 </param> |
| 352 </when> | 352 </when> |
| 353 <when value="bounded"> | 353 <when value="bounded"> |
| 354 <param name="bound_low" argument="--bound_low" type="float" value="0.0" min="0.0" max="1.0" label="lower bound for epsilon, the error rate" help="between 0 and 1.0"/> | 354 <param argument="--bound_low" type="float" value="0.0" min="0.0" max="1.0" label="lower bound for epsilon, the error rate" help="between 0 and 1.0"/> |
| 355 <param name="bound_high" argument="--bound_high" type="float" value="1.0" min="0.0" max="1.0" label="upper bound for epsilon, the error rate" help="between 0 and 1.0" /> | 355 <param argument="--bound_high" type="float" value="1.0" min="0.0" max="1.0" label="upper bound for epsilon, the error rate" help="between 0 and 1.0" /> |
| 356 <param name="alpha" argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > | 356 <param argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > |
| 357 <option value="0.1">0.1</option> | 357 <option value="0.1">0.1</option> |
| 358 <option value="0.05" selected="True">0.05</option> | 358 <option value="0.05" selected="True">0.05</option> |
| 359 <option value="0.01">0.01</option> | 359 <option value="0.01">0.01</option> |
| 360 <option value="0.001">0.001</option> | 360 <option value="0.001">0.001</option> |
| 361 </param> | 361 </param> |
| 371 <option value="snp" selected="true">SNP</option> | 371 <option value="snp" selected="true">SNP</option> |
| 372 <option value="bounded">Bounded SNP</option> | 372 <option value="bounded">Bounded SNP</option> |
| 373 <option value="fixed">Fixed</option> | 373 <option value="fixed">Fixed</option> |
| 374 </param> | 374 </param> |
| 375 <when value="snp"> | 375 <when value="snp"> |
| 376 <param name="alpha" argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > | 376 <param argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > |
| 377 <option value="0.1">0.1</option> | 377 <option value="0.1">0.1</option> |
| 378 <option value="0.05" selected="True">0.05</option> | 378 <option value="0.05" selected="True">0.05</option> |
| 379 <option value="0.01">0.01</option> | 379 <option value="0.01">0.01</option> |
| 380 <option value="0.001">0.001</option> | 380 <option value="0.001">0.001</option> |
| 381 </param> | 381 </param> |
| 382 </when> | 382 </when> |
| 383 <when value="bounded"> | 383 <when value="bounded"> |
| 384 <param name="bound_low" argument="--bound_low" type="float" value="0.0" min="0.0" max="1.0" label="lower bound for epsilon, the error rate" help="between 0 and 1.0"/> | 384 <param argument="--bound_low" type="float" value="0.0" min="0.0" max="1.0" label="lower bound for epsilon, the error rate" help="between 0 and 1.0"/> |
| 385 <param name="bound_high" argument="--bound_high" type="float" value="1.0" min="0.0" max="1.0" label="upper bound for epsilon, the error rate" help="between 0 and 1.0" /> | 385 <param argument="--bound_high" type="float" value="1.0" min="0.0" max="1.0" label="upper bound for epsilon, the error rate" help="between 0 and 1.0" /> |
| 386 <param name="alpha" argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > | 386 <param argument="--alpha" type="select" label="Chi square significance level required to call a heterozygote or homozygote" > |
| 387 <option value="0.1">0.1</option> | 387 <option value="0.1">0.1</option> |
| 388 <option value="0.05" selected="True">0.05</option> | 388 <option value="0.05" selected="True">0.05</option> |
| 389 <option value="0.01">0.01</option> | 389 <option value="0.01">0.01</option> |
| 390 <option value="0.001">0.001</option> | 390 <option value="0.001">0.001</option> |
| 391 </param> | 391 </param> |
| 392 </when> | 392 </when> |
| 393 <when value="fixed"> | 393 <when value="fixed"> |
| 394 <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/> | 394 <param argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/> |
| 395 </when> | 395 </when> |
| 396 </conditional> | 396 </conditional> |
| 397 </xml> | 397 </xml> |
| 398 | 398 |
| 399 <xml name="barcode_encoding_single"> | 399 <xml name="barcode_encoding_single"> |