comparison macros.xml @ 9:4ee074ca88fb draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 6ecb1ddafc5575514f9929430e5452027ad02439

8:c209e3f3359b

            <when value="fixed">
                <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/>
            </when>
        </conditional>
    </xml>
</macros>

9:4ee074ca88fb

            <when value="fixed">
                <param name="bc_err_freq" argument="--bc_err_freq" type="float" value="0.1" min="0.0" max="1.0" label="Barcode error frequency" help="between 0 and 1.0"/>
            </when>
        </conditional>
    </xml>

    <xml name="barcode_encoding_single">
        <option value="--inline_null" selected="True">Barcode is inline with sequence</option>
        <option value="--index_null">Barcode is provided in FASTQ header</option>
    </xml>

    <xml name="barcode_encoding_pair">
        <option value="--inline_null" selected="True">Barcode is inline with sequence</option>
        <option value="--null_index">random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).</option>
        <option value="--index_null">random oligo is provded in FASTQ header (Illumina i5 or i7 read)</option>
        <option value="--inline_inline">random oligo is inline with sequence, occurs on single and paired-end read</option>
        <option value="--index_index">random oligo is provded in FASTQ header (Illumina i5 and i7 read)</option>
        <option value="--inline_index">random oligo is inline with sequence on single-end read and second oligo occurs in FASTQ header</option>
        <option value="--index_inline">random oligo occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data)</option>
    </xml>
</macros>