Mercurial > repos > iuc > stacks_sstacks

annotate test-data/populations/batch_1.vcf @ 10:e38d181d4e72 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 689ccfe1532a4de7b60fe69cd3945601d76aefb6"
author iuc
date Thu, 26 Sep 2019 10:18:23 -0400
parents 679f97ac0dd5
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.2
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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2 ##fileDate=20160926
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
3 ##source="Stacks v1.42"
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
4 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
5 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
8 ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Allele Depth">
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
9 ##FORMAT=<ID=GL,Number=.,Type=Float,Description="Genotype Likelihood">
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
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diff changeset
11 un 35 1_33 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:6,4:.,13.18,.
679f97ac0dd5 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 643293a896a2ccfac10fe995f48c7f01c1a89a7f
iuc
parents:
diff changeset
12 un 90 1_88 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:4,6:.,13.18,.