Mercurial > repos > iuc > stacks_stats

annotate test-data/populations/batch_1.vcf @ 3:93b16407d6e9 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 5f2ec13ecca435abaac2b99ba21f1d6497ec7139"
author iuc
date Tue, 22 Mar 2022 23:17:29 +0000
parents fe6be53294c9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
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1 ##fileformat=VCFv4.2
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
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2 ##fileDate=20160926
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
diff changeset
3 ##source="Stacks v1.42"
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
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4 ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
diff changeset
5 ##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
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6 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
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7 ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
diff changeset
8 ##FORMAT=<ID=AD,Number=1,Type=Integer,Description="Allele Depth">
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
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9 ##FORMAT=<ID=GL,Number=.,Type=Float,Description="Genotype Likelihood">
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
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10 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT PopA_01 PopA_02
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
diff changeset
11 un 35 1_33 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:6,4:.,13.18,.
fe6be53294c9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
iuc
parents:
diff changeset
12 un 90 1_88 A C . PASS NS=2;AF=0.500 GT:DP:AD:GL 0/1:18:9,9:.,19.78,. 0/1:10:4,6:.,13.18,.