Mercurial > repos > iuc > stacks_stats
comparison test-data/procrad/process_radtags.out @ 0:fe6be53294c9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
author | iuc |
---|---|
date | Thu, 27 Apr 2017 04:18:05 -0400 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:fe6be53294c9 |
---|---|
1 process_radtags -1 /tmp/tmpTg8Tep/files/000/dataset_1.dat -2 /tmp/tmpTg8Tep/files/000/dataset_2.dat -i fastq -b /tmp/tmpTg8Tep/files/000/dataset_3.dat --inline_null -e ecoRI -y fastq -D -w 0.15 -q -s 10 -o galaxy_outputs | |
2 process_radtags version 1.37 executed 2016-03-31 10:44:24 | |
3 | |
4 File Retained Reads Low Quality Ambiguous Barcodes Ambiguous RAD-Tag Total | |
5 dataset_1.dat 1767 0 0 233 2000 | |
6 | |
7 Total Sequences 2000 | |
8 Ambiguous Barcodes 0 | |
9 Low Quality 0 | |
10 Ambiguous RAD-Tag 233 | |
11 Retained Reads 1767 | |
12 | |
13 Barcode Filename Total No RadTag Low Quality Retained | |
14 ATGGGG PopA_01 56 0 0 56 | |
15 GGGTAA PopA_02 84 14 0 70 | |
16 AGGAAA PopA_03 76 22 0 54 | |
17 TTTAAG PopA_04 52 24 0 28 | |
18 GGTGTG PopA_05 64 10 0 54 | |
19 TGATGT PopA_06 100 32 0 68 | |
20 GGTTGT PopA_07 100 31 0 69 | |
21 ATAAGT PopA_08 84 12 0 72 | |
22 AAGATA PopA_09 68 26 0 42 | |
23 TGTGAG PopA_10 0 0 0 0 | |
24 ATAGTT PopA_11 52 0 0 52 | |
25 GGAAGG PopA_12 36 0 0 36 | |
26 TTTGTG PopA_13 44 0 0 44 | |
27 TTAAAT PopA_14 52 0 0 52 | |
28 AATAAG PopA_15 52 0 0 52 | |
29 AAGAGG PopA_16 28 0 0 28 | |
30 TAGTGT PopA_17 56 0 0 56 | |
31 TGGAAG PopA_18 72 0 0 72 | |
32 GGGTTG PopA_19 36 0 0 36 | |
33 CATCAT PopA_20 76 24 0 52 | |
34 GGAGAG PopB_20 44 0 0 44 | |
35 GTTTTA PopB_01 20 0 0 20 | |
36 TGATAA PopB_02 64 0 0 64 | |
37 GTTGAT PopB_03 40 0 0 40 | |
38 AGATTA PopB_04 20 0 0 20 | |
39 GTATAG PopB_05 12 0 0 12 | |
40 TTGGGA PopB_06 52 0 0 52 | |
41 ATATAT PopB_07 40 0 0 40 | |
42 GATGAG PopB_08 64 0 0 64 | |
43 GGGAAT PopB_09 44 0 0 44 | |
44 AGTAAT PopB_10 52 0 0 52 | |
45 GGGATA PopB_11 48 0 0 48 | |
46 GAGAAG PopB_12 28 0 0 28 | |
47 AGTAGA PopB_13 44 0 0 44 | |
48 AAGGAT PopB_14 64 22 0 42 | |
49 AGGGTA PopB_15 64 0 0 64 | |
50 TGTTTT PopB_16 8 0 0 8 | |
51 ATGATG PopB_17 0 0 0 0 | |
52 GAGTTA PopB_18 44 0 0 44 | |
53 ATGTAG PopB_19 60 16 0 44 | |
54 | |
55 Sequences not recorded | |
56 Barcode Total |