Mercurial > repos > iuc > stacks_stats
comparison stacks_stats.xml @ 4:a0c52b82b9d3 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 74ee33c6e30744a6da8deb7116d431d80ee80edb
author | iuc |
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date | Fri, 07 Apr 2023 22:04:12 +0000 |
parents | 93b16407d6e9 |
children |
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3:93b16407d6e9 | 4:a0c52b82b9d3 |
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1 <tool id="stacks_stats" name="Stacks: statistics" version="@WRAPPER_VERSION@.0"> | 1 <tool id="stacks_stats" name="Stacks: statistics" version="@WRAPPER_VERSION@.0"> |
2 <description>on stacks found for multiple samples</description> | 2 <description>on stacks found for multiple samples</description> |
3 <expand macro="bio_tools"/> | |
4 <macros> | 3 <macros> |
5 <import>macros.xml</import> | 4 <import>macros.xml</import> |
6 </macros> | 5 </macros> |
6 <expand macro="bio_tools"/> | |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <expand macro="stdio"/> | 8 <expand macro="stdio"/> |
9 <command><![CDATA[ | 9 <command><![CDATA[ |
10 mkdir stacks_inputs | 10 mkdir stacks_inputs |
11 | 11 |
27 <param name="program" type="select" argument="--stacks-prog" label="Program which generated the stacks"> | 27 <param name="program" type="select" argument="--stacks-prog" label="Program which generated the stacks"> |
28 <option value="ustacks">ustacks (denovo)</option> | 28 <option value="ustacks">ustacks (denovo)</option> |
29 <option value="pstacks">pstacks (refmap)</option> | 29 <option value="pstacks">pstacks (refmap)</option> |
30 </param> | 30 </param> |
31 | 31 |
32 <param name="logfile" argument="--logfile" format="txt" type="data" label="Log generated by the program" /> | 32 <param argument="--logfile" format="txt" type="data" label="Log generated by the program" /> |
33 | 33 |
34 <param name="input_col" format="tabular,txt" type="data_collection" collection_type="list" label="Output from ustacks or pstacks" /> | 34 <param name="input_col" format="tabular,txt" type="data_collection" collection_type="list" label="Output from ustacks or pstacks" /> |
35 </inputs> | 35 </inputs> |
36 | 36 |
37 <outputs> | 37 <outputs> |