Mercurial > repos > iuc > stacks_stats
diff test-data/procrad/process_radtags.out @ 0:fe6be53294c9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit dc23703c260d004a28fe24a2a7c00cb4371bc32e
author | iuc |
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date | Thu, 27 Apr 2017 04:18:05 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/procrad/process_radtags.out Thu Apr 27 04:18:05 2017 -0400 @@ -0,0 +1,56 @@ +process_radtags -1 /tmp/tmpTg8Tep/files/000/dataset_1.dat -2 /tmp/tmpTg8Tep/files/000/dataset_2.dat -i fastq -b /tmp/tmpTg8Tep/files/000/dataset_3.dat --inline_null -e ecoRI -y fastq -D -w 0.15 -q -s 10 -o galaxy_outputs +process_radtags version 1.37 executed 2016-03-31 10:44:24 + +File Retained Reads Low Quality Ambiguous Barcodes Ambiguous RAD-Tag Total +dataset_1.dat 1767 0 0 233 2000 + +Total Sequences 2000 +Ambiguous Barcodes 0 +Low Quality 0 +Ambiguous RAD-Tag 233 +Retained Reads 1767 + +Barcode Filename Total No RadTag Low Quality Retained +ATGGGG PopA_01 56 0 0 56 +GGGTAA PopA_02 84 14 0 70 +AGGAAA PopA_03 76 22 0 54 +TTTAAG PopA_04 52 24 0 28 +GGTGTG PopA_05 64 10 0 54 +TGATGT PopA_06 100 32 0 68 +GGTTGT PopA_07 100 31 0 69 +ATAAGT PopA_08 84 12 0 72 +AAGATA PopA_09 68 26 0 42 +TGTGAG PopA_10 0 0 0 0 +ATAGTT PopA_11 52 0 0 52 +GGAAGG PopA_12 36 0 0 36 +TTTGTG PopA_13 44 0 0 44 +TTAAAT PopA_14 52 0 0 52 +AATAAG PopA_15 52 0 0 52 +AAGAGG PopA_16 28 0 0 28 +TAGTGT PopA_17 56 0 0 56 +TGGAAG PopA_18 72 0 0 72 +GGGTTG PopA_19 36 0 0 36 +CATCAT PopA_20 76 24 0 52 +GGAGAG PopB_20 44 0 0 44 +GTTTTA PopB_01 20 0 0 20 +TGATAA PopB_02 64 0 0 64 +GTTGAT PopB_03 40 0 0 40 +AGATTA PopB_04 20 0 0 20 +GTATAG PopB_05 12 0 0 12 +TTGGGA PopB_06 52 0 0 52 +ATATAT PopB_07 40 0 0 40 +GATGAG PopB_08 64 0 0 64 +GGGAAT PopB_09 44 0 0 44 +AGTAAT PopB_10 52 0 0 52 +GGGATA PopB_11 48 0 0 48 +GAGAAG PopB_12 28 0 0 28 +AGTAGA PopB_13 44 0 0 44 +AAGGAT PopB_14 64 22 0 42 +AGGGTA PopB_15 64 0 0 64 +TGTTTT PopB_16 8 0 0 8 +ATGATG PopB_17 0 0 0 0 +GAGTTA PopB_18 44 0 0 44 +ATGTAG PopB_19 60 16 0 44 + +Sequences not recorded +Barcode Total