# HG changeset patch
# User iuc
# Date 1488192310 18000
# Node ID dc96f579ef90de359542fef5803d74d5686ca9d0
# Parent  ff04b37486543054349375fbd219b321e02865d5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stacks commit 9401451df4a985ef5686864eaadafa077ffc0877

diff -r ff04b3748654 -r dc96f579ef90 macros.xml
--- a/macros.xml	Mon Sep 26 11:45:47 2016 -0400
+++ b/macros.xml	Mon Feb 27 05:45:10 2017 -0500
@@ -38,9 +38,9 @@
 
 **Project links:**
 
-`Stacks website <http://creskolab.uoregon.edu/stacks/>`_
+`Stacks website <http://catchenlab.life.illinois.edu/stacks/>`_
 
-`Stacks manual <http://creskolab.uoregon.edu/stacks/stacks_manual.pdf>`_
+`Stacks manual <http://catchenlab.life.illinois.edu/stacks/manual/>`_
 
 `Stacks google group <http://groups.google.com/group/stacks-users>`_
 ]]></token>
diff -r ff04b3748654 -r dc96f579ef90 stacks_ustacks.xml
--- a/stacks_ustacks.xml	Mon Sep 26 11:45:47 2016 -0400
+++ b/stacks_ustacks.xml	Mon Feb 27 05:45:10 2017 -0500
@@ -13,7 +13,7 @@
 
         &&
 
-        #if $sample.ext == "fastqsanger":
+        #if $sample.is_of_type('fastqsanger'):
             #set $data_path = splitext($sample.element_identifier)[0]
             #set $data_path = re.sub(r'\.1$', '', $data_path)
             #set $data_path = "stacks_inputs/" + $data_path + ".fq"