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comparison test-data/stringtie_merge_out2.gtf @ 20:cef79931dda5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 7f649c10c5d874f466122af0d24803a4c6affabb
author iuc
date Wed, 27 Jul 2022 09:28:15 +0000
parents 258d696dbd7e
children 914cfcba0ec8
comparison
equal deleted inserted replaced
19:333a6e13b622 20:cef79931dda5
1 # stringtie --merge -p 1 -G /tmp/tmp9cgbzsli/files/d/3/d/dataset_d3debef6-0cc0-44aa-898c-086d4fa8adb0.dat -m 50 -c 0 -F 1.0 -T 1.0 -f 0.01 -g 250 -o /tmp/tmp9cgbzsli/files/b/4/d/dataset_b4dd908f-5f52-428f-bc2c-ba62cd00a83e.dat /tmp/tmp9cgbzsli/files/8/1/a/dataset_81a6719e-2f36-40ca-9d63-325d6eadd1d3.dat /tmp/tmp9cgbzsli/files/2/2/f/dataset_22f857ec-0df8-40d8-ba00-28b709b98b03.dat 1 # StringTie version 2\.1\.7
2 # StringTie version 2.1.7 2 # stringtie --merge -p [0-9]+ -G /[-_/a-zA-Z0-9]+\.dat -m 50 -c 0 -F 1\.0 -T 1\.0 -f 0\.01 -g 250 -o /[-_/a-zA-Z0-9]+\.dat /[-_/a-zA-Z0-9]+\.dat /[-_/a-zA-Z0-9]+\.dat
3 chr1 StringTie transcript 3189811 3193042 1000 . . gene_id "MSTRG.1"; transcript_id "MSTRG.1.1"; 3 chr1\tStringTie\texon\t3189811\t3193042\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
4 chr1 StringTie exon 3189811 3193042 1000 . . gene_id "MSTRG.1"; transcript_id "MSTRG.1.1"; exon_number "1"; 4 chr1\tStringTie\texon\t3200023\t3200191\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
5 chr1 StringTie transcript 3200023 3200191 1000 . . gene_id "MSTRG.2"; transcript_id "MSTRG.2.1"; 5 chr1\tStringTie\texon\t3201078\t3201809\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
6 chr1 StringTie exon 3200023 3200191 1000 . . gene_id "MSTRG.2"; transcript_id "MSTRG.2.1"; exon_number "1"; 6 chr1\tStringTie\texon\t3204563\t3207049\t1000\t-\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "Xkr4"; exon_number "[0-9]+"; ref_gene_id "Xkr4";
7 chr1 StringTie transcript 3201078 3201809 1000 . . gene_id "MSTRG.3"; transcript_id "MSTRG.3.1"; 7 chr1\tStringTie\texon\t3212214\t3212439\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
8 chr1 StringTie exon 3201078 3201809 1000 . . gene_id "MSTRG.3"; transcript_id "MSTRG.3.1"; exon_number "1"; 8 chr1\tStringTie\texon\t3212718\t3212801\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
9 chr1 StringTie transcript 3204563 3661579 1000 - . gene_id "MSTRG.4"; transcript_id "Xkr4"; ref_gene_id "Xkr4"; 9 chr1\tStringTie\texon\t3213096\t3213242\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
10 chr1 StringTie exon 3204563 3207049 1000 - . gene_id "MSTRG.4"; transcript_id "Xkr4"; exon_number "1"; ref_gene_id "Xkr4"; 10 chr1\tStringTie\texon\t3242634\t3243079\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
11 chr1 StringTie exon 3411783 3411982 1000 - . gene_id "MSTRG.4"; transcript_id "Xkr4"; exon_number "2"; ref_gene_id "Xkr4"; 11 chr1\tStringTie\texon\t3243348\t3243401\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
12 chr1 StringTie exon 3660633 3661579 1000 - . gene_id "MSTRG.4"; transcript_id "Xkr4"; exon_number "3"; ref_gene_id "Xkr4"; 12 chr1\tStringTie\texon\t3277914\t3278390\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
13 chr1 StringTie transcript 3212214 3212439 1000 . . gene_id "MSTRG.5"; transcript_id "MSTRG.5.1"; 13 chr1\tStringTie\texon\t3280687\t3280741\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
14 chr1 StringTie exon 3212214 3212439 1000 . . gene_id "MSTRG.5"; transcript_id "MSTRG.5.1"; exon_number "1"; 14 chr1\tStringTie\texon\t3282761\t3282832\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
15 chr1 StringTie transcript 3212718 3212801 1000 . . gene_id "MSTRG.6"; transcript_id "MSTRG.6.1"; 15 chr1\tStringTie\texon\t3290489\t3291273\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
16 chr1 StringTie exon 3212718 3212801 1000 . . gene_id "MSTRG.6"; transcript_id "MSTRG.6.1"; exon_number "1"; 16 chr1\tStringTie\texon\t3299444\t3299664\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
17 chr1 StringTie transcript 3213096 3213242 1000 . . gene_id "MSTRG.7"; transcript_id "MSTRG.7.1"; 17 chr1\tStringTie\texon\t3319000\t3319051\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
18 chr1 StringTie exon 3213096 3213242 1000 . . gene_id "MSTRG.7"; transcript_id "MSTRG.7.1"; exon_number "1"; 18 chr1\tStringTie\texon\t3351241\t3351311\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
19 chr1 StringTie transcript 3242634 3243079 1000 . . gene_id "MSTRG.8"; transcript_id "MSTRG.8.1"; 19 chr1\tStringTie\texon\t3355908\t3356119\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
20 chr1 StringTie exon 3242634 3243079 1000 . . gene_id "MSTRG.8"; transcript_id "MSTRG.8.1"; exon_number "1"; 20 chr1\tStringTie\texon\t3363077\t3363446\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
21 chr1 StringTie transcript 3243348 3243401 1000 . . gene_id "MSTRG.9"; transcript_id "MSTRG.9.1"; 21 chr1\tStringTie\texon\t3363754\t3363849\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
22 chr1 StringTie exon 3243348 3243401 1000 . . gene_id "MSTRG.9"; transcript_id "MSTRG.9.1"; exon_number "1"; 22 chr1\tStringTie\texon\t3377212\t3377262\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
23 chr1 StringTie transcript 3277914 3278390 1000 . . gene_id "MSTRG.10"; transcript_id "MSTRG.10.1"; 23 chr1\tStringTie\texon\t3386740\t3386836\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
24 chr1 StringTie exon 3277914 3278390 1000 . . gene_id "MSTRG.10"; transcript_id "MSTRG.10.1"; exon_number "1"; 24 chr1\tStringTie\texon\t3411783\t3411982\t1000\t-\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "Xkr4"; exon_number "[0-9]+"; ref_gene_id "Xkr4";
25 chr1 StringTie transcript 3280687 3280741 1000 . . gene_id "MSTRG.11"; transcript_id "MSTRG.11.1"; 25 chr1\tStringTie\texon\t3450907\t3451109\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1"; exon_number "[0-9]+";
26 chr1 StringTie exon 3280687 3280741 1000 . . gene_id "MSTRG.11"; transcript_id "MSTRG.11.1"; exon_number "1"; 26 chr1\tStringTie\texon\t3660633\t3661579\t1000\t-\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "Xkr4"; exon_number "[0-9]+"; ref_gene_id "Xkr4";
27 chr1 StringTie transcript 3282761 3282832 1000 . . gene_id "MSTRG.12"; transcript_id "MSTRG.12.1"; 27 chr1\tStringTie\ttranscript\t3189811\t3193042\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
28 chr1 StringTie exon 3282761 3282832 1000 . . gene_id "MSTRG.12"; transcript_id "MSTRG.12.1"; exon_number "1"; 28 chr1\tStringTie\ttranscript\t3200023\t3200191\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
29 chr1 StringTie transcript 3290489 3291273 1000 . . gene_id "MSTRG.13"; transcript_id "MSTRG.13.1"; 29 chr1\tStringTie\ttranscript\t3201078\t3201809\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
30 chr1 StringTie exon 3290489 3291273 1000 . . gene_id "MSTRG.13"; transcript_id "MSTRG.13.1"; exon_number "1"; 30 chr1\tStringTie\ttranscript\t3204563\t3661579\t1000\t-\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "Xkr4"; ref_gene_id "Xkr4";
31 chr1 StringTie transcript 3299444 3299664 1000 . . gene_id "MSTRG.14"; transcript_id "MSTRG.14.1"; 31 chr1\tStringTie\ttranscript\t3212214\t3212439\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
32 chr1 StringTie exon 3299444 3299664 1000 . . gene_id "MSTRG.14"; transcript_id "MSTRG.14.1"; exon_number "1"; 32 chr1\tStringTie\ttranscript\t3212718\t3212801\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
33 chr1 StringTie transcript 3319000 3319051 1000 . . gene_id "MSTRG.15"; transcript_id "MSTRG.15.1"; 33 chr1\tStringTie\ttranscript\t3213096\t3213242\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
34 chr1 StringTie exon 3319000 3319051 1000 . . gene_id "MSTRG.15"; transcript_id "MSTRG.15.1"; exon_number "1"; 34 chr1\tStringTie\ttranscript\t3242634\t3243079\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
35 chr1 StringTie transcript 3351241 3351311 1000 . . gene_id "MSTRG.16"; transcript_id "MSTRG.16.1"; 35 chr1\tStringTie\ttranscript\t3243348\t3243401\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
36 chr1 StringTie exon 3351241 3351311 1000 . . gene_id "MSTRG.16"; transcript_id "MSTRG.16.1"; exon_number "1"; 36 chr1\tStringTie\ttranscript\t3277914\t3278390\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
37 chr1 StringTie transcript 3355908 3356119 1000 . . gene_id "MSTRG.17"; transcript_id "MSTRG.17.1"; 37 chr1\tStringTie\ttranscript\t3280687\t3280741\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
38 chr1 StringTie exon 3355908 3356119 1000 . . gene_id "MSTRG.17"; transcript_id "MSTRG.17.1"; exon_number "1"; 38 chr1\tStringTie\ttranscript\t3282761\t3282832\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
39 chr1 StringTie transcript 3363077 3363446 1000 . . gene_id "MSTRG.18"; transcript_id "MSTRG.18.1"; 39 chr1\tStringTie\ttranscript\t3290489\t3291273\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
40 chr1 StringTie exon 3363077 3363446 1000 . . gene_id "MSTRG.18"; transcript_id "MSTRG.18.1"; exon_number "1"; 40 chr1\tStringTie\ttranscript\t3299444\t3299664\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
41 chr1 StringTie transcript 3363754 3363849 1000 . . gene_id "MSTRG.19"; transcript_id "MSTRG.19.1"; 41 chr1\tStringTie\ttranscript\t3319000\t3319051\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
42 chr1 StringTie exon 3363754 3363849 1000 . . gene_id "MSTRG.19"; transcript_id "MSTRG.19.1"; exon_number "1"; 42 chr1\tStringTie\ttranscript\t3351241\t3351311\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
43 chr1 StringTie transcript 3377212 3377262 1000 . . gene_id "MSTRG.20"; transcript_id "MSTRG.20.1"; 43 chr1\tStringTie\ttranscript\t3355908\t3356119\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
44 chr1 StringTie exon 3377212 3377262 1000 . . gene_id "MSTRG.20"; transcript_id "MSTRG.20.1"; exon_number "1"; 44 chr1\tStringTie\ttranscript\t3363077\t3363446\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
45 chr1 StringTie transcript 3386740 3386836 1000 . . gene_id "MSTRG.21"; transcript_id "MSTRG.21.1"; 45 chr1\tStringTie\ttranscript\t3363754\t3363849\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
46 chr1 StringTie exon 3386740 3386836 1000 . . gene_id "MSTRG.21"; transcript_id "MSTRG.21.1"; exon_number "1"; 46 chr1\tStringTie\ttranscript\t3377212\t3377262\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
47 chr1 StringTie transcript 3450907 3451109 1000 . . gene_id "MSTRG.22"; transcript_id "MSTRG.22.1"; 47 chr1\tStringTie\ttranscript\t3386740\t3386836\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
48 chr1 StringTie exon 3450907 3451109 1000 . . gene_id "MSTRG.22"; transcript_id "MSTRG.22.1"; exon_number "1"; 48 chr1\tStringTie\ttranscript\t3450907\t3451109\t1000\t\.\t\.\tgene_id "MSTRG\.[0-9]+"; transcript_id "MSTRG\.[0-9]+\.1";
49 chr1 mm9_refFlat transcript 4334224 4350473 . - . gene_id "Rp1"; transcript_id "Rp1"; ref_gene_id "Rp1"; 49 chr1\tmm9_refFlat\texon\t4334224\t4340172\t\.\t-\t\.\tgene_id "Rp1"; transcript_id "Rp1"; exon_number "[0-9]+";
50 chr1 mm9_refFlat exon 4334224 4340172 . - . gene_id "Rp1"; transcript_id "Rp1"; exon_number "1"; 50 chr1\tmm9_refFlat\texon\t4341991\t4342162\t\.\t-\t\.\tgene_id "Rp1"; transcript_id "Rp1"; exon_number "[0-9]+";
51 chr1 mm9_refFlat exon 4341991 4342162 . - . gene_id "Rp1"; transcript_id "Rp1"; exon_number "2"; 51 chr1\tmm9_refFlat\texon\t4342283\t4342918\t\.\t-\t\.\tgene_id "Rp1"; transcript_id "Rp1"; exon_number "[0-9]+";
52 chr1 mm9_refFlat exon 4342283 4342918 . - . gene_id "Rp1"; transcript_id "Rp1"; exon_number "3"; 52 chr1\tmm9_refFlat\texon\t4350281\t4350473\t\.\t-\t\.\tgene_id "Rp1"; transcript_id "Rp1"; exon_number "[0-9]+";
53 chr1 mm9_refFlat exon 4350281 4350473 . - . gene_id "Rp1"; transcript_id "Rp1"; exon_number "4"; 53 chr1\tmm9_refFlat\texon\t4481009\t4482749\t\.\t-\t\.\tgene_id "Sox17"; transcript_id "Sox17"; exon_number "[0-9]+";
54 chr1 mm9_refFlat transcript 4481009 4486494 . - . gene_id "Sox17"; transcript_id "Sox17"; ref_gene_id "Sox17"; 54 chr1\tmm9_refFlat\texon\t4483181\t4483547\t\.\t-\t\.\tgene_id "Sox17"; transcript_id "Sox17"; exon_number "[0-9]+";
55 chr1 mm9_refFlat exon 4481009 4482749 . - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "1"; 55 chr1\tmm9_refFlat\texon\t4483853\t4483944\t\.\t-\t\.\tgene_id "Sox17"; transcript_id "Sox17"; exon_number "[0-9]+";
56 chr1 mm9_refFlat exon 4483181 4483547 . - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "2"; 56 chr1\tmm9_refFlat\texon\t4485217\t4486023\t\.\t-\t\.\tgene_id "Sox17"; transcript_id "Sox17"; exon_number "[0-9]+";
57 chr1 mm9_refFlat exon 4483853 4483944 . - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "3"; 57 chr1\tmm9_refFlat\texon\t4486372\t4486494\t\.\t-\t\.\tgene_id "Sox17"; transcript_id "Sox17"; exon_number "[0-9]+";
58 chr1 mm9_refFlat exon 4485217 4486023 . - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "4"; 58 chr1\tmm9_refFlat\texon\t4763279\t4764597\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "[0-9]+";
59 chr1 mm9_refFlat exon 4486372 4486494 . - . gene_id "Sox17"; transcript_id "Sox17"; exon_number "5"; 59 chr1\tmm9_refFlat\texon\t4763279\t4764597\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; exon_number "[0-9]+";
60 chr1 mm9_refFlat transcript 4763279 4775807 . - . gene_id "Mrpl15"; transcript_id "Mrpl15"; ref_gene_id "Mrpl15"; 60 chr1\tmm9_refFlat\texon\t4763279\t4766882\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "[0-9]+";
61 chr1 mm9_refFlat exon 4763279 4766882 . - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "1"; 61 chr1\tmm9_refFlat\texon\t4767606\t4767729\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "[0-9]+";
62 chr1 mm9_refFlat exon 4767606 4767729 . - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "2"; 62 chr1\tmm9_refFlat\texon\t4767606\t4767729\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "[0-9]+";
63 chr1 mm9_refFlat exon 4772649 4772814 . - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "3"; 63 chr1\tmm9_refFlat\texon\t4767606\t4767729\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; exon_number "[0-9]+";
64 chr1 mm9_refFlat exon 4774032 4774186 . - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "4"; 64 chr1\tmm9_refFlat\texon\t4772649\t4772814\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "[0-9]+";
65 chr1 mm9_refFlat exon 4775654 4775807 . - . gene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "5"; 65 chr1\tmm9_refFlat\texon\t4772649\t4772814\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "[0-9]+";
66 chr1 mm9_refFlat transcript 4763279 4775807 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; ref_gene_id "Mrpl15"; 66 chr1\tmm9_refFlat\texon\t4772649\t4772814\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; exon_number "[0-9]+";
67 chr1 mm9_refFlat exon 4763279 4764597 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "1"; 67 chr1\tmm9_refFlat\texon\t4774032\t4774186\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "[0-9]+";
68 chr1 mm9_refFlat exon 4767606 4767729 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "2"; 68 chr1\tmm9_refFlat\texon\t4774032\t4774186\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "[0-9]+";
69 chr1 mm9_refFlat exon 4772649 4772814 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "3"; 69 chr1\tmm9_refFlat\texon\t4775654\t4775807\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15"; exon_number "[0-9]+";
70 chr1 mm9_refFlat exon 4774032 4774186 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "4"; 70 chr1\tmm9_refFlat\texon\t4775654\t4775807\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "[0-9]+";
71 chr1 mm9_refFlat exon 4775654 4775807 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; exon_number "5"; 71 chr1\tmm9_refFlat\texon\t4775654\t4775807\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; exon_number "[0-9]+";
72 chr1 mm9_refFlat transcript 4763279 4775807 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; ref_gene_id "Mrpl15"; 72 chr1\tmm9_refFlat\texon\t4797974\t4798063\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
73 chr1 mm9_refFlat exon 4763279 4764597 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; exon_number "1"; 73 chr1\tmm9_refFlat\texon\t4798536\t4798567\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
74 chr1 mm9_refFlat exon 4767606 4767729 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; exon_number "2"; 74 chr1\tmm9_refFlat\texon\t4818665\t4818730\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
75 chr1 mm9_refFlat exon 4772649 4772814 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; exon_number "3"; 75 chr1\tmm9_refFlat\texon\t4820349\t4820396\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
76 chr1 mm9_refFlat exon 4775654 4775807 . - . gene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; exon_number "4"; 76 chr1\tmm9_refFlat\texon\t4822392\t4822462\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
77 chr1 mm9_refFlat transcript 4797974 4836816 . + . gene_id "Lypla1"; transcript_id "Lypla1"; ref_gene_id "Lypla1"; 77 chr1\tmm9_refFlat\texon\t4827082\t4827155\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
78 chr1 mm9_refFlat exon 4797974 4798063 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "1"; 78 chr1\tmm9_refFlat\texon\t4829468\t4829569\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
79 chr1 mm9_refFlat exon 4798536 4798567 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "2"; 79 chr1\tmm9_refFlat\texon\t4831037\t4831213\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
80 chr1 mm9_refFlat exon 4818665 4818730 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "3"; 80 chr1\tmm9_refFlat\texon\t4835044\t4836816\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; exon_number "[0-9]+";
81 chr1 mm9_refFlat exon 4820349 4820396 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "4"; 81 chr1\tmm9_refFlat\texon\t4847775\t4848057\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
82 chr1 mm9_refFlat exon 4822392 4822462 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "5"; 82 chr1\tmm9_refFlat\texon\t4847775\t4848057\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1_dup1"; exon_number "[0-9]+";
83 chr1 mm9_refFlat exon 4827082 4827155 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "6"; 83 chr1\tmm9_refFlat\texon\t4857551\t4857613\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
84 chr1 mm9_refFlat exon 4829468 4829569 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "7"; 84 chr1\tmm9_refFlat\texon\t4857551\t4857613\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1_dup1"; exon_number "[0-9]+";
85 chr1 mm9_refFlat exon 4831037 4831213 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "8"; 85 chr1\tmm9_refFlat\texon\t4868108\t4868213\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
86 chr1 mm9_refFlat exon 4835044 4836816 . + . gene_id "Lypla1"; transcript_id "Lypla1"; exon_number "9"; 86 chr1\tmm9_refFlat\texon\t4876825\t4876912\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
87 chr1 mm9_refFlat transcript 4847775 4857613 . + . gene_id "Tcea1"; transcript_id "Tcea1_dup1"; ref_gene_id "Tcea1"; 87 chr1\tmm9_refFlat\texon\t4879538\t4879683\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
88 chr1 mm9_refFlat exon 4847775 4848057 . + . gene_id "Tcea1"; transcript_id "Tcea1_dup1"; exon_number "1"; 88 chr1\tmm9_refFlat\texon\t4880821\t4880877\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
89 chr1 mm9_refFlat exon 4857551 4857613 . + . gene_id "Tcea1"; transcript_id "Tcea1_dup1"; exon_number "2"; 89 chr1\tmm9_refFlat\texon\t4881996\t4882150\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
90 chr1 mm9_refFlat transcript 4847775 4887987 . + . gene_id "Tcea1"; transcript_id "Tcea1"; ref_gene_id "Tcea1"; 90 chr1\tmm9_refFlat\texon\t4883498\t4883644\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
91 chr1 mm9_refFlat exon 4847775 4848057 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "1"; 91 chr1\tmm9_refFlat\texon\t4885015\t4885086\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
92 chr1 mm9_refFlat exon 4857551 4857613 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "2"; 92 chr1\tmm9_refFlat\texon\t4886437\t4887987\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; exon_number "[0-9]+";
93 chr1 mm9_refFlat exon 4868108 4868213 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "3"; 93 chr1\tmm9_refFlat\ttranscript\t4334224\t4350473\t\.\t-\t\.\tgene_id "Rp1"; transcript_id "Rp1"; ref_gene_id "Rp1";
94 chr1 mm9_refFlat exon 4876825 4876912 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "4"; 94 chr1\tmm9_refFlat\ttranscript\t4481009\t4486494\t\.\t-\t\.\tgene_id "Sox17"; transcript_id "Sox17"; ref_gene_id "Sox17";
95 chr1 mm9_refFlat exon 4879538 4879683 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "5"; 95 chr1\tmm9_refFlat\ttranscript\t4763279\t4775807\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15"; ref_gene_id "Mrpl15";
96 chr1 mm9_refFlat exon 4880821 4880877 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "6"; 96 chr1\tmm9_refFlat\ttranscript\t4763279\t4775807\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup1"; ref_gene_id "Mrpl15";
97 chr1 mm9_refFlat exon 4881996 4882150 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "7"; 97 chr1\tmm9_refFlat\ttranscript\t4763279\t4775807\t\.\t-\t\.\tgene_id "Mrpl15"; transcript_id "Mrpl15_dup2"; ref_gene_id "Mrpl15";
98 chr1 mm9_refFlat exon 4883498 4883644 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "8"; 98 chr1\tmm9_refFlat\ttranscript\t4797974\t4836816\t\.\t\+\t\.\tgene_id "Lypla1"; transcript_id "Lypla1"; ref_gene_id "Lypla1";
99 chr1 mm9_refFlat exon 4885015 4885086 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "9"; 99 chr1\tmm9_refFlat\ttranscript\t4847775\t4857613\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1_dup1"; ref_gene_id "Tcea1";
100 chr1 mm9_refFlat exon 4886437 4887987 . + . gene_id "Tcea1"; transcript_id "Tcea1"; exon_number "10"; 100 chr1\tmm9_refFlat\ttranscript\t4847775\t4887987\t\.\t\+\t\.\tgene_id "Tcea1"; transcript_id "Tcea1"; ref_gene_id "Tcea1";