Mercurial > repos > iuc > stringtie
diff test-data/stringtie_out5.gtf @ 24:cbf488da3b2c draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 8dc7b89b32a9e86c48e9ef7078703ae277bdaf96
| author | iuc |
|---|---|
| date | Mon, 13 May 2024 14:07:55 +0000 |
| parents | 8eb8750070d4 |
| children |
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--- a/test-data/stringtie_out5.gtf Tue Apr 30 11:53:08 2024 +0000 +++ b/test-data/stringtie_out5.gtf Mon May 13 14:07:55 2024 +0000 @@ -1,5 +1,5 @@ -# stringtie /tmp/tmpm2qmdax_/files/5/b/5/dataset_5b55cbd8-f515-46d6-b1d2-71201435248b.dat -o /tmp/tmpm2qmdax_/job_working_directory/000/13/outputs/dataset_3b84d9d9-efe9-4d58-9f34-c6d3f5da763f.dat -p 1 -G guide.gff -C /tmp/tmpm2qmdax_/job_working_directory/000/13/outputs/dataset_8fb2eb9a-4a6c-4300-9639-0a39336f7dab.dat -b ./special_de_output/sample1/ -f 0.01 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0 -# StringTie version 2.2.2 +# stringtie /tmp/tmp0_r_zs0r/files/d/0/d/dataset_d0dfd219-9dc5-47c7-bb3e-d0a0751c4f8f.dat -o /tmp/tmp0_r_zs0r/job_working_directory/000/13/outputs/dataset_9a98f26d-1db3-49d9-80e7-755a92d2f17d.dat -p 1 -G guide.gff -C /tmp/tmp0_r_zs0r/job_working_directory/000/13/outputs/dataset_816761de-9208-416a-b240-adb727109d43.dat -b ./special_de_output/sample1/ -f 0.01 -m 200 -a 10 -j 1 -c 1 -g 50 -M 1.0 +# StringTie version 2.2.3 test_chromosome StringTie transcript 53 550 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "45.241611"; FPKM "3314403.750000"; TPM "1000000.000000"; test_chromosome StringTie exon 53 250 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "49.237373"; test_chromosome StringTie exon 351 400 1000 + . gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "53.000004";