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view test-data/stringtie_out4.gtf @ 5:f504b3b7e49d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/stringtie commit 65c9ce2fdc2b4ce892df8e456f18b859a85c410a
author iuc
date Wed, 21 Oct 2015 16:07:42 -0400
parents 520e0988ec1c
children d0bb240d7525
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# stringtie /tmp/tmpoOYb63/files/000/dataset_35.dat -o /tmp/tmpoOYb63/files/000/dataset_37.dat -p 1 -C /tmp/tmpoOYb63/files/000/dataset_39.dat -G /tmp/tmpoOYb63/files/000/dataset_36.dat -l STRG -f 0.17 -m 200 -a 10 -j 1 -c 2 -g 50 -M 0.95 -A /tmp/tmpoOYb63/files/000/dataset_38.dat
# StringTie version 1.1.0
test_chromosome	StringTie	transcript	53	550	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "44.724823"; FPKM "3276543.750000"; TPM "996187.875000";
test_chromosome	StringTie	exon	53	250	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "1"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "49.011967";
test_chromosome	StringTie	exon	351	400	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "2"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "51.382565";
test_chromosome	StringTie	exon	501	550	1000	+	.	gene_id "STRG.1"; transcript_id "STRG.1.1"; exon_number "3"; reference_id "CUFF.1.1"; ref_gene_id "CUFF.1"; cov "21.090000";