diff structure.xml @ 2:0080ad37f8a0 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/structure commit 23755ec4deed7de2d80bfb7de30e0bfc2eaa3818

--- a/structure.xml	Wed Dec 06 05:37:27 2017 -0500
+++ b/structure.xml	Wed Aug 29 11:19:42 2018 -0400
@@ -13,8 +13,8 @@
         mkdir out log
 
         #for $run in range(1, int($nb_run) + 1):
-            && structure -i '$infile' -o outfile -m '$out_mainparams' -e '$out_extraparams' > 'log/run${run}_K_${main.MAXPOPS}.log'
-            && mv 'outfile_f' 'out/run${run}_K_${main.MAXPOPS}.out'
+            && structure -i '$infile' -o outfile -m '$out_mainparams' -e '$out_extraparams' > 'log/K_${main.MAXPOPS}_run_${run}_f.log'
+            && mv 'outfile_f' 'out/K_${main.MAXPOPS}_run_${run}_f'
         #end for
 
     ]]></command>
@@ -430,16 +430,16 @@
                 </conditional>
             </section>
             <output_collection name="out" type="list">
-                <element name="run1_K_2.out" value="testdata1_f"  lines_diff="6" />
-                <element name="run2_K_2.out" value="testdata1_f"  lines_diff="6" />
+                <element name="K_2_run_1_f" value="testdata1_f"  lines_diff="6" />
+                <element name="K_2_run_2_f" value="testdata1_f"  lines_diff="6" />
             </output_collection>
             <output_collection name="log" type="list">
-                <element name="run1_K_2.log">
+                <element name="K_2_run_1_f.log">
                     <assert_contents>
                         <has_line line="Final results printed to file outfile_f" />
                     </assert_contents>
                 </element>
-                <element name="run2_K_2.log">
+                <element name="K_2_run_2_f.log">
                     <assert_contents>
                         <has_line line="Final results printed to file outfile_f" />
                     </assert_contents>