Mercurial > repos > iuc > suite_mothur

diff repository_dependencies.xml @ 14:1c726cc47ae6 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit dfdd4c590370ecb3a9806314d43eb5668e36a01a"
author iuc
date Fri, 22 Jan 2021 02:07:20 +0000
parents a8aba90dc716
children
line wrap: on
line diff
--- a/repository_dependencies.xml	Tue Dec 08 15:19:12 2020 +0000
+++ b/repository_dependencies.xml	Fri Jan 22 02:07:20 2021 +0000
@@ -1,132 +1,132 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
-    <repository owner="iuc" name="mothur_classify_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8ca80de3f4ef"/>
-    <repository owner="iuc" name="mothur_create_database" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3cd1ccb4d58b"/>
-    <repository owner="iuc" name="mothur_make_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5eaf2d7253f6"/>
-    <repository owner="iuc" name="mothur_screen_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c1feef4d5e34"/>
-    <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1f6046c0efdd"/>
-    <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="be74be7f5d90"/>
-    <repository owner="iuc" name="mothur_merge_files" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f5dba396fe63"/>
-    <repository owner="iuc" name="mothur_mantel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ea41c6924945"/>
-    <repository owner="iuc" name="mothur_filter_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="89b9efa3c1f0"/>
-    <repository owner="iuc" name="mothur_chop_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bfb14e1053a1"/>
-    <repository owner="iuc" name="mothur_get_oturep" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1e1a6eaae624"/>
-    <repository owner="iuc" name="mothur_summary_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="782564664543"/>
-    <repository owner="iuc" name="mothur_classify_tree" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="17081663ab68"/>
-    <repository owner="iuc" name="mothur_trim_flows" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1f336ed182b8"/>
-    <repository owner="iuc" name="mothur_rarefaction_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="76149f899b5c"/>
-    <repository owner="iuc" name="mothur_phylo_diversity" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="20b1d5bb66d0"/>
-    <repository owner="iuc" name="mothur_get_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6b173f5aa3ca"/>
-    <repository owner="iuc" name="mothur_merge_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="23d11599dfaf"/>
-    <repository owner="iuc" name="mothur_get_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="65853cd9ac99"/>
-    <repository owner="iuc" name="mothur_make_lookup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d20ab289b0c0"/>
-    <repository owner="iuc" name="mothur_cluster_classic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="97ac7726c985"/>
-    <repository owner="iuc" name="mothur_libshuff" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1fe5098be27a"/>
-    <repository owner="iuc" name="mothur_count_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="014583f8e83b"/>
-    <repository owner="iuc" name="mothur_venn" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="139bdc1c3b48"/>
-    <repository owner="iuc" name="mothur_get_label" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="07d9a6a72e6d"/>
-    <repository owner="iuc" name="mothur_summary_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8c18ced5e8c3"/>
-    <repository owner="iuc" name="mothur_make_group" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7ea39cdd3c5d"/>
-    <repository owner="iuc" name="mothur_dist_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="10f5ecfab7bb"/>
-    <repository owner="iuc" name="mothur_make_biom" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ecd90b4198a2"/>
-    <repository owner="iuc" name="mothur_homova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ca2b0847c8a2"/>
-    <repository owner="iuc" name="mothur_sffinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8b42e4ec39df"/>
-    <repository owner="iuc" name="mothur_trim_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="38eea52b9ef7"/>
-    <repository owner="iuc" name="mothur_get_mimarkspackage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9983b77b0532"/>
-    <repository owner="iuc" name="mothur_remove_rare" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7b6e00f6c21f"/>
-    <repository owner="iuc" name="mothur_list_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3612e382d294"/>
-    <repository owner="iuc" name="mothur_list_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c2d81e2bf502"/>
-    <repository owner="iuc" name="mothur_clearcut" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a735e855f28f"/>
-    <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f49de3951b73"/>
-    <repository owner="iuc" name="mothur_collect_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="acfb60d5d435"/>
-    <repository owner="iuc" name="mothur_degap_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1cbf0af70205"/>
-    <repository owner="iuc" name="mothur_anosim" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="87c5f82dac4c"/>
-    <repository owner="iuc" name="mothur_get_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dd84e5f5eeaa"/>
-    <repository owner="iuc" name="mothur_merge_taxsummary" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="41f056a2ca71"/>
-    <repository owner="iuc" name="mothur_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ee26037477a1"/>
-    <repository owner="iuc" name="mothur_amova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="389ac95dc2f5"/>
-    <repository owner="iuc" name="mothur_shhh_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e7327eaaab37"/>
-    <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="98abd0047263"/>
-    <repository owner="iuc" name="mothur_sens_spec" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="27171cf0b8ba"/>
-    <repository owner="iuc" name="mothur_primer_design" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="aa4dcd3099fe"/>
-    <repository owner="iuc" name="mothur_classify_otu" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="86b2201a1f4b"/>
-    <repository owner="iuc" name="mothur_split_abund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="246519916e6a"/>
-    <repository owner="iuc" name="mothur_tree_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ae1468c3e1fa"/>
-    <repository owner="iuc" name="mothur_sub_sample" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="893d9058d563"/>
-    <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="618612060af3"/>
-    <repository owner="iuc" name="mothur_summary_tax" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c85146fe9890"/>
-    <repository owner="iuc" name="mothur_sort_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="56bf9112c46b"/>
-    <repository owner="iuc" name="mothur_make_sra" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="abb205c9b967"/>
-    <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4af62516059b"/>
-    <repository owner="iuc" name="mothur_make_design" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4228d1b7aa01"/>
-    <repository owner="iuc" name="mothur_remove_otus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6bdb704814f4"/>
-    <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="09f802a2c3fa"/>
-    <repository owner="iuc" name="mothur_filter_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="382b60f3756e"/>
-    <repository owner="iuc" name="mothur_fastq_info" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="25f02dced96c"/>
-    <repository owner="iuc" name="mothur_biom_info" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="223e748e0268"/>
-    <repository owner="iuc" name="mothur_get_dists" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d1fba6b01a90"/>
-    <repository owner="iuc" name="mothur_align_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="72276610cdfa"/>
-    <repository owner="iuc" name="mothur_get_sharedseqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="414307889d75"/>
-    <repository owner="iuc" name="mothur_unique_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="71788e5ced45"/>
-    <repository owner="iuc" name="mothur_pre_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="872dbea91d49"/>
-    <repository owner="iuc" name="mothur_seq_error" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cd31c11bcc25"/>
-    <repository owner="iuc" name="mothur_make_lefse" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b009f1b8e922"/>
-    <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0fde524609b1"/>
-    <repository owner="iuc" name="mothur_deunique_tree" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1ace9d6863aa"/>
-    <repository owner="iuc" name="mothur_chimera_uchime" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="89ae96c8d333"/>
-    <repository owner="iuc" name="mothur_get_relabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6b3130958acc"/>
-    <repository owner="iuc" name="mothur_make_fastq" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e6a7eaf1923d"/>
-    <repository owner="iuc" name="mothur_collect_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d7de4aa1fdd1"/>
-    <repository owner="iuc" name="mothur_chimera_vsearch" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="12e856482d26"/>
-    <repository owner="iuc" name="mothur_pcr_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="482d26a40589"/>
-    <repository owner="iuc" name="mothur_lefse" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="008cb5a481f2"/>
-    <repository owner="iuc" name="mothur_get_sabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="132ec4ee9d17"/>
-    <repository owner="iuc" name="mothur_remove_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b0748ba87fba"/>
-    <repository owner="iuc" name="mothur_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1b695ad32179"/>
-    <repository owner="iuc" name="mothur_unifrac_unweighted" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="42ae7755f3c1"/>
-    <repository owner="iuc" name="mothur_chimera_bellerophon" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b732e27030e8"/>
-    <repository owner="iuc" name="mothur_consensus_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e14fb5184328"/>
-    <repository owner="iuc" name="mothur_merge_count" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9696e3b3a098"/>
-    <repository owner="iuc" name="mothur_get_otus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="71d3e589c0b1"/>
-    <repository owner="iuc" name="mothur_dist_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6290d3234345"/>
-    <repository owner="iuc" name="mothur_pcoa" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="539f247ff952"/>
-    <repository owner="iuc" name="mothur_parse_list" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="94d78559a361"/>
-    <repository owner="iuc" name="mothur_chimera_perseus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="17df89a5847b"/>
-    <repository owner="iuc" name="mothur_mimarks_attributes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bfbd98549bc4"/>
-    <repository owner="iuc" name="mothur_heatmap_bin" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="921a072b8552"/>
-    <repository owner="iuc" name="mothur_remove_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5a41ab037c7c"/>
-    <repository owner="iuc" name="mothur_count_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a0fc4eb349af"/>
-    <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="696ed5c6d1f0"/>
-    <repository owner="iuc" name="mothur_get_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fc4b74b7f345"/>
-    <repository owner="iuc" name="mothur_deunique_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="276c9f17a9a2"/>
-    <repository owner="iuc" name="mothur_otu_association" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0037bed5bf77"/>
-    <repository owner="iuc" name="mothur_corr_axes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9db54b02c49d"/>
-    <repository owner="iuc" name="mothur_get_group" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f220bbab51e1"/>
-    <repository owner="iuc" name="mothur_remove_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9480bbc368c0"/>
-    <repository owner="iuc" name="mothur_chimera_pintail" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d06d799b19ae"/>
-    <repository owner="iuc" name="mothur_cooccurrence" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="512d7ce50a57"/>
-    <repository owner="iuc" name="mothur_make_contigs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="00dd059b77e5"/>
-    <repository owner="iuc" name="mothur_chimera_check" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c4572980d8f9"/>
-    <repository owner="iuc" name="mothur_normalize_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a89fbfe8386f"/>
-    <repository owner="iuc" name="mothur_summary_qual" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="656ffc277a38"/>
-    <repository owner="iuc" name="mothur_chimera_ccode" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="983b440a26b2"/>
-    <repository owner="iuc" name="mothur_pairwise_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bc53948e3666"/>
-    <repository owner="iuc" name="mothur_heatmap_sim" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="24328bd746b5"/>
-    <repository owner="iuc" name="mothur_get_rabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7792e8e95112"/>
-    <repository owner="iuc" name="mothur_cluster_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a54f91ad1c84"/>
-    <repository owner="iuc" name="mothur_rarefaction_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ebb853546cac"/>
-    <repository owner="iuc" name="mothur_bin_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="49a970c244c2"/>
-    <repository owner="iuc" name="mothur_nmds" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f36dc56e8a2b"/>
-    <repository owner="iuc" name="mothur_metastats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6adb9311e99d"/>
-    <repository owner="iuc" name="mothur_indicator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a224c578d941"/>
-    <repository owner="iuc" name="mothur_split_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="53cbf80d4a65"/>
-    <repository owner="iuc" name="mothur_parsimony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="70d555c67aec"/>
-    <repository owner="iuc" name="mothur_align_check" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b2bc37b60346"/>
-    <repository owner="iuc" name="mothur_shhh_flows" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fcb3fa45b93e"/>
-    <repository owner="iuc" name="mothur_phylotype" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="12e24ffced04"/>
-    <repository owner="iuc" name="mothur_get_otulist" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ef6e35325002"/>
-    <repository owner="iuc" name="mothur_remove_dists" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ad18e40e8569"/>
-    <repository owner="iuc" name="mothur_get_communitytype" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="79dc573692a4"/>
-    <repository owner="iuc" name="mothur_rename_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ac151f3a8f94"/>
-    <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4484fe89e1a5"/>
+    <repository owner="iuc" name="mothur_get_oturep" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="305ce07a4b16"/>
+    <repository owner="iuc" name="mothur_dist_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f25598da7174"/>
+    <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="609770e516fa"/>
+    <repository owner="iuc" name="mothur_make_lookup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="23c1af22331b"/>
+    <repository owner="iuc" name="mothur_get_otulist" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="85f75125d861"/>
+    <repository owner="iuc" name="mothur_phylotype" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4d219b4dfd6a"/>
+    <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="da05ce41f8f0"/>
+    <repository owner="iuc" name="mothur_indicator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1c6dadf7bc72"/>
+    <repository owner="iuc" name="mothur_summary_qual" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="86a40294e149"/>
+    <repository owner="iuc" name="mothur_count_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="03c86648a52e"/>
+    <repository owner="iuc" name="mothur_filter_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2d1dbf69f589"/>
+    <repository owner="iuc" name="mothur_collect_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c9d3eed082fc"/>
+    <repository owner="iuc" name="mothur_lefse" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ccd1ce71c11f"/>
+    <repository owner="iuc" name="mothur_cluster_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1b7fd1678230"/>
+    <repository owner="iuc" name="mothur_sort_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fc60d2e290a4"/>
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 </repositories>
\ No newline at end of file