Mercurial > repos > iuc > suite_mothur

changeset 1:50f1227b870c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit e2075caee2ecdc6aed15a356e5328c5ca09cfb13
author iuc
date Fri, 09 Jun 2017 07:18:59 -0400
parents 4dd542b36183
children f2e52c8aa6da
files repository_dependencies.xml
diffstat 1 files changed, 110 insertions(+), 110 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Fri May 19 06:01:12 2017 -0400
+++ b/repository_dependencies.xml	Fri Jun 09 07:18:59 2017 -0400
@@ -1,128 +1,128 @@
 <?xml version="1.0"?>
-<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="ee20e83b2a92" name="mothur_rarefaction_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+<repositories description="A suite of tools designed to bring the mothur project into Galaxy.">  <repository changeset_revision="1c04b0449893" name="mothur_lefse" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="35c11001da8b" name="mothur_chimera_perseus" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ffeb8cd81f04" name="mothur_tree_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="afac0d63dac6" name="mothur_collect_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="82a5c9700e76" name="mothur_consensus_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0c303113990d" name="mothur_make_lookup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6dc4f9beec9f" name="mothur_chimera_uchime" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="06a0aef8a5f7" name="mothur_bin_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fddd81ee5cd4" name="mothur_shhh_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b6f7f17203ad" name="mothur_count_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a38b4b058203" name="mothur_get_dists" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8c1b609f566d" name="mothur_cluster" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="992d380f24ea" name="mothur_make_group" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7cd72305d496" name="mothur_degap_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f217eb7fad54" name="mothur_get_lineage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7c817f668dac" name="mothur_metastats" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5996c4d331bc" name="mothur_collect_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b7635a7037a7" name="mothur_chop_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="636e98c0966e" name="mothur_classify_tree" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="79490c77c27f" name="mothur_primer_design" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="61cfe849101c" name="mothur_phylotype" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c49147967884" name="mothur_make_fastq" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4b07bc776ccb" name="mothur_remove_otus" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4f5213348132" name="mothur_shhh_flows" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
   <repository changeset_revision="741303a463c8" name="mothur_remove_dists" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d891666964ad" name="mothur_homova" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b0718c06e329" name="mothur_heatmap_bin" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="4b2dabf45996" name="mothur_deunique_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6cb0335df5db" name="mothur_cooccurrence" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="042fba3006e9" name="mothur_normalize_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="388291e9ab3f" name="mothur_make_biom" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0d34975c52a0" name="mothur_amova" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="76c27b0fa016" name="mothur_summary_tax" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="bccb5efbc4ee" name="mothur_filter_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="14062c54b6f6" name="mothur_parse_list" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e86199dc2a7c" name="mothur_get_communitytype" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
   <repository changeset_revision="7f5f942a6862" name="mothur_make_design" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b15d9a2d2311" name="mothur_split_abund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="d103727775eb" name="mothur_dist_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b7635a7037a7" name="mothur_chop_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="41f5224b856b" name="mothur_summary_qual" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="57b46e1032ad" name="mothur_pcoa" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="6c4190485910" name="mothur_get_label" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5ada2d00e874" name="mothur_sffinfo" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6cb0335df5db" name="mothur_cooccurrence" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f17cc7d2fa71" name="mothur_rarefaction_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9ea778acd657" name="mothur_summary_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="143f949a5def" name="mothur_trim_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="002aec843953" name="mothur_heatmap_sim" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="b0718c06e329" name="mothur_heatmap_bin" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="afd434bb48af" name="mothur_remove_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8e25e5e9e75f" name="mothur_trim_flows" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6f454356bfc7" name="mothur_count_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="917aa3b39ccd" name="mothur_phylo_diversity" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="56400efc6755" name="mothur_pca" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2a0d8b8c3ade" name="mothur_classify_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="7773b7afb53d" name="mothur_dist_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2e6fb8f23d5e" name="mothur_get_otulist" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
   <repository changeset_revision="ddb2e4c51634" name="mothur_classify_otu" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="eb8c2262bd1b" name="mothur_make_sra" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="0c303113990d" name="mothur_make_lookup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="042fba3006e9" name="mothur_normalize_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f979130469f4" name="mothur_clearcut" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="41f5224b856b" name="mothur_summary_qual" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
   <repository changeset_revision="872cb4f6fa0b" name="mothur_cluster_classic" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="f217eb7fad54" name="mothur_get_lineage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="636e98c0966e" name="mothur_classify_tree" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="a8a1a7c5ab14" name="mothur_reverse_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="4f5213348132" name="mothur_shhh_flows" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4170555c36c1" name="mothur_merge_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fe6e11f9f639" name="mothur_pairwise_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5480c7cbde6f" name="mothur_remove_rare" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e59ddb750b65" name="mothur_remove_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="8eebcd1d81b0" name="mothur_merge_taxsummary" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a522f1b60172" name="mothur_nmds" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="eb727b7b76b4" name="mothur_summary_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9ab5ebae3fb2" name="mothur_create_database" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e6758f2f744b" name="mothur_get_oturep" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e86c535cf4d1" name="mothur_list_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="200b088eaf93" name="mothur_get_group" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4f4e85809481" name="mothur_classify_rf" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e2b43f377f7d" name="mothur_get_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e7f1da3e0339" name="mothur_merge_sfffiles" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e7a69b6134c5" name="mothur_remove_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d58287720f30" name="mothur_make_lefse" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
   <repository changeset_revision="2b3fac454f43" name="mothur_make_contigs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="fddd81ee5cd4" name="mothur_shhh_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="2146e981bc7f" name="mothur_chimera_bellerophon" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="d891666964ad" name="mothur_homova" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="0468cb2dd83e" name="mothur_unique_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
   <repository changeset_revision="8e874c18a298" name="mothur_chimera_check" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="b8947620846f" name="mothur_make_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7cd72305d496" name="mothur_degap_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="fc3330ca7c70" name="mothur_get_rabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="79490c77c27f" name="mothur_primer_design" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="28a135978ed0" name="mothur_merge_files" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5480c7cbde6f" name="mothur_remove_rare" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="992d380f24ea" name="mothur_make_group" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="fe6e11f9f639" name="mothur_pairwise_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="afac0d63dac6" name="mothur_collect_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="2a0d8b8c3ade" name="mothur_classify_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e70a33ec8f3b" name="mothur_cluster_split" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4b4ca5a8e3e2" name="mothur_otu_association" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="e66e20795ddb" name="mothur_indicator" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5b184e7eebaa" name="mothur_parsimony" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ad446a792958" name="mothur_get_mimarkspackage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="dba66f208b1a" name="mothur_split_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="04aa7542e2df" name="mothur_mantel" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="fb34c63ab676" name="mothur_get_coremicrobiome" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="4ad3ea2f8584" name="mothur_get_relabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="5a18d3d09b80" name="mothur_remove_lineage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="90796e3ff3ef" name="mothur_deunique_tree" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a8a1a7c5ab14" name="mothur_reverse_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="24044cd8ef87" name="mothur_list_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="be6c106b1960" name="mothur_sub_sample" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="57b46e1032ad" name="mothur_pcoa" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="692381e1abfe" name="mothur_pcr_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="a8653fd1ca73" name="mothur_sort_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="ee20e83b2a92" name="mothur_rarefaction_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="c4b6d7acffbf" name="mothur_make_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="f70e050ddb40" name="mothur_align_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="145595c55727" name="mothur_cluster_fragments" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="78776d48bbad" name="mothur_sens_spec" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="08ccc12f2a3a" name="mothur_anosim" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="6c4190485910" name="mothur_get_label" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
+  <repository changeset_revision="9377122cc144" name="mothur_summary_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
   <repository changeset_revision="3eca08ae427b" name="mothur_chimera_ccode" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e7a69b6134c5" name="mothur_remove_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e7f1da3e0339" name="mothur_merge_sfffiles" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e70a33ec8f3b" name="mothur_cluster_split" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="ffeb8cd81f04" name="mothur_tree_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1e243f796db9" name="mothur_chimera_pintail" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="5996c4d331bc" name="mothur_collect_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="dba66f208b1a" name="mothur_split_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="e6758f2f744b" name="mothur_get_oturep" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7c817f668dac" name="mothur_metastats" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="7773b7afb53d" name="mothur_dist_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="002aec843953" name="mothur_heatmap_sim" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
-  <repository changeset_revision="1d496917a707" name="mothur_get_sharedseqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
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