Mercurial > repos > iuc > suite_mothur

changeset 11:ab9a91d5f796 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"
author iuc
date Fri, 06 Nov 2020 00:14:25 +0000
parents d1090b154857
children ccf54b10c308
files repository_dependencies.xml
diffstat 1 files changed, 129 insertions(+), 129 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Mon Dec 02 06:51:23 2019 -0500
+++ b/repository_dependencies.xml	Fri Nov 06 00:14:25 2020 +0000
@@ -1,132 +1,132 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
-    <repository changeset_revision="fd62ac4a6b84" name="mothur_get_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a41ba5f5f6b8" name="mothur_get_sabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="1ba1fe2a0438" name="mothur_corr_axes" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="11be0e5f3ebb" name="mothur_summary_qual" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="bd695645069f" name="mothur_get_rabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="1edab4936153" name="mothur_fastq_info" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="200defe4c42b" name="mothur_venn" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c3f0b847dc40" name="mothur_sens_spec" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ba2b321b6b64" name="mothur_rename_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c7d41770f4ce" name="mothur_phylo_diversity" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="948d5731dbe0" name="mothur_homova" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="e29c05b88096" name="mothur_make_biom" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="6dbc31423c24" name="mothur_get_mimarkspackage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="39750697d7a6" name="mothur_indicator" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="d848e23e9343" name="mothur_pre_cluster" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="60f0853e33f3" name="mothur_make_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="8a67e60260ca" name="mothur_get_otus" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a136fc12b26a" name="mothur_screen_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4e708ec53432" name="mothur_get_communitytype" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="fe9f4a0d61d3" name="mothur_metastats" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="44d5c9ba72e6" name="mothur_collect_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="cf1db89b0fda" name="mothur_chimera_bellerophon" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="487977c2c586" name="mothur_primer_design" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="83d3c6dba0b1" name="mothur_heatmap_bin" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="fec1c905cb22" name="mothur_classify_tree" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="99579d05a632" name="mothur_parse_list" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="fa40dca23957" name="mothur_split_abund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f65c34178487" name="mothur_make_contigs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="2531a323f0c2" name="mothur_remove_rare" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="b5bcc4bf53d1" name="mothur_rarefaction_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4bf939e17fa4" name="mothur_bin_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="29f963e785a0" name="mothur_chop_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="88be2167f369" name="mothur_make_lefse" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="2f5d4d86eb9a" name="mothur_classify_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="84722a5b79af" name="mothur_unique_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="3fac82ad3f01" name="mothur_remove_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="98687b00be79" name="mothur_anosim" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="7ad44d831a1f" name="mothur_clearcut" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="dc318dec8b86" name="mothur_trim_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="af2b5be87d4f" name="mothur_tree_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="007311ce6297" name="mothur_filter_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="bf608ff56ecf" name="mothur_make_sra" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="b07e7be6326a" name="mothur_get_relabund" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f821624d355c" name="mothur_get_oturep" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="1a899fec55e1" name="mothur_dist_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="485e149a8aba" name="mothur_pcoa" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="b587a3a485b8" name="mothur_filter_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="50312cd2fc7a" name="mothur_rarefaction_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f7f5cd1ae299" name="mothur_reverse_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a33258dc5bf8" name="mothur_make_lookup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="753321ddded9" name="mothur_chimera_slayer" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="99c44fc3cd32" name="mothur_split_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="81df36f90a1b" name="mothur_summary_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4041dc69af62" name="mothur_summary_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="21a9274337f5" name="mothur_merge_files" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="152ae632ab19" name="mothur_align_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="1684157db3c1" name="mothur_make_fastq" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a2511c40e7b8" name="mothur_otu_association" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="d0074e20ae76" name="mothur_amova" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="0f3baac24045" name="mothur_chimera_perseus" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f3a65ee4bfda" name="mothur_sffinfo" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c8fbbada97dc" name="mothur_get_dists" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="0f4dfa0332e8" name="mothur_sub_sample" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="80b791e2a7bd" name="mothur_get_label" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="081d0fbf9751" name="mothur_get_group" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="8354a02a83e1" name="mothur_mimarks_attributes" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="76d968f820ac" name="mothur_biom_info" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="3cc04a065490" name="mothur_nmds" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="fd6cebeaa143" name="mothur_parsimony" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="11795a719c90" name="mothur_remove_dists" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4a73df58d56b" name="mothur_pairwise_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="0399e5aeaac6" name="mothur_align_check" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="334476d3e35d" name="mothur_sort_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="182b471ed56b" name="mothur_make_group" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="5ea1f1f9d801" name="mothur_cluster" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="eec15ff2d3c9" name="mothur_remove_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a8bc62f05cfa" name="mothur_normalize_shared" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="d47a909185ef" name="mothur_lefse" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f0cf508cdc98" name="mothur_get_otulist" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="6a622b34394a" name="mothur_unifrac_unweighted" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="bc2b62823fcc" name="mothur_consensus_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="45a78bb8819d" name="mothur_libshuff" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="93b61db8bdb6" name="mothur_chimera_pintail" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="d5610390efaa" name="mothur_merge_count" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="73aeeac872d7" name="mothur_deunique_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="0a23bfe005be" name="mothur_pcr_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="28867c3771e1" name="mothur_count_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="5133ef623148" name="mothur_remove_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="72be09dfd803" name="mothur_summary_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="5fa9b6d481f6" name="mothur_cluster_fragments" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="74d1b765843b" name="mothur_pca" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="0e05f58541d0" name="mothur_cooccurrence" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="8b8c7cf6738c" name="mothur_get_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="551a2d9c0aa7" name="mothur_phylotype" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="2a4d6c3d9b6d" name="mothur_remove_lineage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ec5e03c0f18e" name="mothur_deunique_tree" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="26ddda2d2462" name="mothur_merge_sfffiles" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4e6cdbeaf3b5" name="mothur_shhh_flows" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f1742cf23d95" name="mothur_chimera_uchime" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="dd4546e98188" name="mothur_chimera_vsearch" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="42244e3619cf" name="mothur_get_coremicrobiome" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="319884cd49a3" name="mothur_create_database" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="38c03ac3d622" name="mothur_remove_otus" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="693fbc55f70e" name="mothur_otu_hierarchy" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ec53d27ee602" name="mothur_taxonomy_to_krona" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a9924d4f538f" name="mothur_cluster_split" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="ec7c3ecca41a" name="mothur_classify_otu" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4b57c3241cbc" name="mothur_chimera_check" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="7cb9b120fd44" name="mothur_unifrac_weighted" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="e643cc6c39cb" name="mothur_list_otulabels" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="2851c368b879" name="mothur_seq_error" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="b6e0f8a9bc6b" name="mothur_chimera_ccode" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="4405d0fbfada" name="mothur_make_design" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="aa189387c19c" name="mothur_shhh_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="bcc475f1af4a" name="mothur_mantel" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="45f3904bfdd2" name="mothur_trim_flows" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="a649d3ca67b7" name="mothur_cluster_classic" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="563718e09fa8" name="mothur_get_lineage" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="67faa6dacbae" name="mothur_get_sharedseqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="502323efbd82" name="mothur_dist_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="2393ecc7387c" name="mothur_degap_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="f170676a1d12" name="mothur_merge_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c2dead9d38c4" name="mothur_heatmap_sim" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="3a2ee62cb710" name="mothur_merge_taxsummary" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="9b600578c108" name="mothur_list_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="d3b196069f6f" name="mothur_collect_single" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="c07510858fb0" name="mothur_summary_tax" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="e4d70a26c19f" name="mothur_get_groups" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
-    <repository changeset_revision="59a962f57cb5" name="mothur_count_seqs" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"/>
+    <repository owner="iuc" name="mothur_make_contigs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ab12df91b47f"/>
+    <repository owner="iuc" name="mothur_sens_spec" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b36825c79054"/>
+    <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0ca1d45851ee"/>
+    <repository owner="iuc" name="mothur_remove_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c03e5575b636"/>
+    <repository owner="iuc" name="mothur_make_fastq" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="97587d4961a0"/>
+    <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b296d6f25ee3"/>
+    <repository owner="iuc" name="mothur_tree_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bf740ca1752a"/>
+    <repository owner="iuc" name="mothur_heatmap_sim" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4e5640d04cab"/>
+    <repository owner="iuc" name="mothur_get_label" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c0a77971f496"/>
+    <repository owner="iuc" name="mothur_shhh_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e963609595cc"/>
+    <repository owner="iuc" name="mothur_amova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b0b3fa851bba"/>
+    <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d1cb34c1bfa3"/>
+    <repository owner="iuc" name="mothur_get_rabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8ddccb25fcc6"/>
+    <repository owner="iuc" name="mothur_remove_otus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d0b2ec5b9a25"/>
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+    <repository owner="iuc" name="mothur_count_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="14a1358d0846"/>
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 </repositories>
\ No newline at end of file