Mercurial > repos > iuc > suite_mothur

changeset 12:ccf54b10c308 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit f20b079c868afb2decc111751312b7f2a43f1dfd"
author iuc
date Thu, 26 Nov 2020 04:46:05 +0000
parents ab9a91d5f796
children a8aba90dc716
files repository_dependencies.xml
diffstat 1 files changed, 113 insertions(+), 113 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Fri Nov 06 00:14:25 2020 +0000
+++ b/repository_dependencies.xml	Thu Nov 26 04:46:05 2020 +0000
@@ -1,132 +1,132 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of tools designed to bring the mothur project into Galaxy.">
-    <repository owner="iuc" name="mothur_make_contigs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ab12df91b47f"/>
-    <repository owner="iuc" name="mothur_sens_spec" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b36825c79054"/>
-    <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0ca1d45851ee"/>
-    <repository owner="iuc" name="mothur_remove_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c03e5575b636"/>
+    <repository owner="iuc" name="mothur_make_group" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c7ac82d16b14"/>
+    <repository owner="iuc" name="mothur_classify_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="36ef18cf868b"/>
+    <repository owner="iuc" name="mothur_get_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="506e6a44cc68"/>
+    <repository owner="iuc" name="mothur_pcr_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4dbfdaaa6a05"/>
     <repository owner="iuc" name="mothur_make_fastq" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="97587d4961a0"/>
-    <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b296d6f25ee3"/>
-    <repository owner="iuc" name="mothur_tree_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bf740ca1752a"/>
-    <repository owner="iuc" name="mothur_heatmap_sim" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4e5640d04cab"/>
-    <repository owner="iuc" name="mothur_get_label" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c0a77971f496"/>
-    <repository owner="iuc" name="mothur_shhh_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e963609595cc"/>
-    <repository owner="iuc" name="mothur_amova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b0b3fa851bba"/>
-    <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d1cb34c1bfa3"/>
-    <repository owner="iuc" name="mothur_get_rabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8ddccb25fcc6"/>
-    <repository owner="iuc" name="mothur_remove_otus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d0b2ec5b9a25"/>
-    <repository owner="iuc" name="mothur_sort_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d4c2eccb4f69"/>
-    <repository owner="iuc" name="mothur_count_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="14a1358d0846"/>
-    <repository owner="iuc" name="mothur_sub_sample" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6c9215917d76"/>
-    <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0161571cd8f8"/>
-    <repository owner="iuc" name="mothur_summary_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1a8e53763086"/>
-    <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bf4b64c7d3e8"/>
-    <repository owner="iuc" name="mothur_bin_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b2f3203aeba9"/>
+    <repository owner="iuc" name="mothur_align_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="02ba09e31d94"/>
+    <repository owner="iuc" name="mothur_chimera_uchime" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4de76e144252"/>
+    <repository owner="iuc" name="mothur_nmds" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f65e0350ef5d"/>
+    <repository owner="iuc" name="mothur_mimarks_attributes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5106f3ce22a3"/>
+    <repository owner="iuc" name="mothur_rarefaction_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="57e3e6bf2e41"/>
+    <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9557cc0613de"/>
+    <repository owner="iuc" name="mothur_summary_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="713806caf2cb"/>
+    <repository owner="iuc" name="mothur_fastq_info" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ab2c5805894a"/>
+    <repository owner="iuc" name="mothur_get_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dcecfbcf1edd"/>
+    <repository owner="iuc" name="mothur_remove_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="955ae21bc7e1"/>
     <repository owner="iuc" name="mothur_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="af8d9e36ce7b"/>
     <repository owner="iuc" name="mothur_pre_cluster" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ed67052d4285"/>
-    <repository owner="iuc" name="mothur_make_sra" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2341a1066c67"/>
-    <repository owner="iuc" name="mothur_classify_otu" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="763834b09ee9"/>
-    <repository owner="iuc" name="mothur_mimarks_attributes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5106f3ce22a3"/>
-    <repository owner="iuc" name="mothur_collect_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9db0ddd486f0"/>
+    <repository owner="iuc" name="mothur_cluster_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f73761825a11"/>
+    <repository owner="iuc" name="mothur_split_abund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d665c913e26b"/>
+    <repository owner="iuc" name="mothur_lefse" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7691a4b846fc"/>
+    <repository owner="iuc" name="mothur_classify_tree" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="712115617d17"/>
     <repository owner="iuc" name="mothur_rename_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0a213cb7cb27"/>
-    <repository owner="iuc" name="mothur_split_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6d3d0936f910"/>
-    <repository owner="iuc" name="mothur_count_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5a766fd3d23c"/>
-    <repository owner="iuc" name="mothur_trim_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="29dfb8d90999"/>
-    <repository owner="iuc" name="mothur_get_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="506e6a44cc68"/>
-    <repository owner="iuc" name="mothur_normalize_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4bdf28c910af"/>
-    <repository owner="iuc" name="mothur_mantel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1ef479343cfe"/>
-    <repository owner="iuc" name="mothur_phylotype" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e301ed7e04d8"/>
-    <repository owner="iuc" name="mothur_nmds" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f65e0350ef5d"/>
-    <repository owner="iuc" name="mothur_dist_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="31a3b2112418"/>
-    <repository owner="iuc" name="mothur_unique_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c50d04c78ecb"/>
-    <repository owner="iuc" name="mothur_summary_qual" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6bf32768e15b"/>
-    <repository owner="iuc" name="mothur_make_lefse" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c714d0aa5afa"/>
-    <repository owner="iuc" name="mothur_sffinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3839397c8f28"/>
+    <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c2d0e5bfa088"/>
+    <repository owner="iuc" name="mothur_filter_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="79f24f4ee6b6"/>
+    <repository owner="iuc" name="mothur_classify_otu" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="763834b09ee9"/>
+    <repository owner="iuc" name="mothur_reverse_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0ca1d45851ee"/>
+    <repository owner="iuc" name="mothur_get_rabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8ddccb25fcc6"/>
     <repository owner="iuc" name="mothur_shhh_flows" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="408595fde5c6"/>
-    <repository owner="iuc" name="mothur_get_sharedseqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="32040fb8ffdf"/>
+    <repository owner="iuc" name="mothur_make_design" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="185c17f84d91"/>
+    <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ec04a98762ef"/>
+    <repository owner="iuc" name="mothur_chimera_bellerophon" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="eac4ce45ca79"/>
+    <repository owner="iuc" name="mothur_merge_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="41bba0dfdbe0"/>
+    <repository owner="iuc" name="mothur_get_otulist" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="903acbb547c0"/>
+    <repository owner="iuc" name="mothur_chimera_perseus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="49fa68a982d1"/>
+    <repository owner="iuc" name="mothur_summary_tax" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bbff3370d740"/>
+    <repository owner="iuc" name="mothur_indicator" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b876b3c1690b"/>
+    <repository owner="iuc" name="mothur_dist_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="342a2b68ec4f"/>
+    <repository owner="iuc" name="mothur_get_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d3906a9c70c4"/>
+    <repository owner="iuc" name="mothur_otu_association" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ffbe8c8baaf9"/>
+    <repository owner="iuc" name="mothur_get_sabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4ebedd866934"/>
     <repository owner="iuc" name="mothur_degap_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="36d252955070"/>
-    <repository owner="iuc" name="mothur_list_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6c2a5ff159ff"/>
-    <repository owner="iuc" name="mothur_classify_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="36ef18cf868b"/>
-    <repository owner="iuc" name="mothur_cluster_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f73761825a11"/>
-    <repository owner="iuc" name="mothur_get_coremicrobiome" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="820a106991a5"/>
-    <repository owner="iuc" name="mothur_pcoa" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="64f54fb804b3"/>
-    <repository owner="iuc" name="mothur_rarefaction_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="57e3e6bf2e41"/>
-    <repository owner="iuc" name="mothur_parsimony" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dd1a7b862fab"/>
-    <repository owner="iuc" name="mothur_pcr_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4dbfdaaa6a05"/>
-    <repository owner="iuc" name="mothur_get_relabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ed294552b627"/>
-    <repository owner="iuc" name="mothur_anosim" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e3d2754da9a0"/>
-    <repository owner="iuc" name="mothur_merge_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="41bba0dfdbe0"/>
     <repository owner="iuc" name="mothur_primer_design" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="eecf8144be3a"/>
-    <repository owner="iuc" name="mothur_remove_groups" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fae57cd6cc12"/>
-    <repository owner="iuc" name="mothur_chimera_uchime" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4de76e144252"/>
-    <repository owner="iuc" name="mothur_chimera_bellerophon" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="eac4ce45ca79"/>
+    <repository owner="iuc" name="mothur_get_otus" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="976e1434503d"/>
+    <repository owner="iuc" name="mothur_chimera_vsearch" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7ec5bb321f5b"/>
+    <repository owner="iuc" name="mothur_seq_error" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c8a364414b34"/>
+    <repository owner="iuc" name="mothur_merge_sfffiles" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b296d6f25ee3"/>
+    <repository owner="iuc" name="mothur_otu_hierarchy" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0161571cd8f8"/>
+    <repository owner="iuc" name="mothur_libshuff" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cda3d2247a7b"/>
+    <repository owner="iuc" name="mothur_merge_taxsummary" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="43b27677d1d0"/>
+    <repository owner="iuc" name="mothur_amova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b0b3fa851bba"/>
+    <repository owner="iuc" name="mothur_homova" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d17fe3c8a489"/>
+    <repository owner="iuc" name="mothur_summary_qual" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6bf32768e15b"/>
+    <repository owner="iuc" name="mothur_phylo_diversity" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ef55ccbfb725"/>
     <repository owner="iuc" name="mothur_deunique_tree" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="50a228ab91a3"/>
-    <repository owner="iuc" name="mothur_remove_otulabels" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9557cc0613de"/>
-    <repository owner="iuc" name="mothur_get_lineage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dcecfbcf1edd"/>
-    <repository owner="iuc" name="mothur_chimera_vsearch" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7ec5bb321f5b"/>
-    <repository owner="iuc" name="mothur_pca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9f3da360714c"/>
+    <repository owner="iuc" name="mothur_cluster_fragments" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d1cb34c1bfa3"/>
+    <repository owner="iuc" name="mothur_corr_axes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6a9eaa618abd"/>
+    <repository owner="iuc" name="mothur_cooccurrence" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a3ae2eae5bbe"/>
+    <repository owner="iuc" name="mothur_unifrac_weighted" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bf4b64c7d3e8"/>
+    <repository owner="iuc" name="mothur_tree_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bf740ca1752a"/>
+    <repository owner="iuc" name="mothur_cluster_classic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="14e978a6ffdf"/>
+    <repository owner="iuc" name="mothur_remove_rare" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="33366e3a6099"/>
+    <repository owner="iuc" name="mothur_get_mimarkspackage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cd624927e763"/>
+    <repository owner="iuc" name="mothur_bin_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b2f3203aeba9"/>
     <repository owner="iuc" name="mothur_merge_files" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="129646af86bc"/>
     <repository owner="iuc" name="mothur_trim_flows" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="440c8d6fe21a"/>
-    <repository owner="iuc" name="mothur_chimera_ccode" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d433ebd156c7"/>
-    <repository owner="iuc" name="mothur_summary_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="713806caf2cb"/>
-    <repository owner="iuc" name="mothur_metastats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7c209dbe20b8"/>
-    <repository owner="iuc" name="mothur_make_biom" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b0605e49d01c"/>
-    <repository owner="iuc" name="mothur_clearcut" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f7fabe2362b8"/>
-    <repository owner="iuc" name="mothur_remove_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="955ae21bc7e1"/>
-    <repository owner="iuc" name="mothur_get_communitytype" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f84ff9e03568"/>
-    <repository owner="iuc" name="mothur_screen_seqs" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f4d7d5755f01"/>
-    <repository owner="iuc" name="mothur_filter_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="79f24f4ee6b6"/>
-    <repository owner="iuc" name="mothur_remove_rare" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="33366e3a6099"/>
-    <repository owner="iuc" name="mothur_split_abund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d665c913e26b"/>
-    <repository owner="iuc" name="mothur_seq_error" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c8a364414b34"/>
+    <repository owner="iuc" name="mothur_merge_count" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7848890f9df7"/>
     <repository owner="iuc" name="mothur_get_oturep" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5e43c9229eda"/>
-    <repository owner="iuc" name="mothur_chimera_check" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9f954eb03dc3"/>
-    <repository owner="iuc" name="mothur_chimera_slayer" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c2d0e5bfa088"/>
-    <repository owner="iuc" name="mothur_summary_single" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="88d39b1679df"/>
-    <repository owner="iuc" name="mothur_rarefaction_shared" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f58d1c616fb7"/>
-    <repository owner="iuc" name="mothur_taxonomy_to_krona" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ec04a98762ef"/>
-    <repository owner="iuc" name="mothur_fastq_info" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ab2c5805894a"/>
-    <repository owner="iuc" name="mothur_lefse" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7691a4b846fc"/>
-    <repository owner="iuc" name="mothur_corr_axes" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6a9eaa618abd"/>
-    <repository owner="iuc" name="mothur_unifrac_unweighted" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dd62ea340aa7"/>
+    <repository owner="iuc" name="mothur_get_relabund" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ed294552b627"/>
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 </repositories>
\ No newline at end of file