# HG changeset patch
# User iuc
# Date 1750337852 0
# Node ID 39ea661047b820512ef354970acea850ce97911d
# Parent  68edce78a780f0a58a775a482f11cd4f9570d091
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit c508c3af0f4121dcc38e0be63db00a604e997b8a

diff -r 68edce78a780 -r 39ea661047b8 repository_dependencies.xml
--- a/repository_dependencies.xml	Sun Sep 08 03:24:40 2024 +0000
+++ b/repository_dependencies.xml	Thu Jun 19 12:57:32 2025 +0000
@@ -1,20 +1,20 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of Galaxy tools designed to work with the SAMtools package.">
     <repository owner="devteam" name="samtools_bedcov" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6856f8a01905"/>
-    <repository owner="devteam" name="samtools_calmd" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c89806670ab9"/>
+    <repository owner="devteam" name="samtools_calmd" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="26b4f9f98aca"/>
     <repository owner="iuc" name="samtools_depth" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="971dc85e9441"/>
-    <repository owner="iuc" name="samtools_fastx" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="66e23b11feae"/>
-    <repository owner="iuc" name="samtools_fixmate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e5ece8fa99de"/>
+    <repository owner="iuc" name="samtools_fastx" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b906586a6596"/>
+    <repository owner="iuc" name="samtools_fixmate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d2df79922531"/>
     <repository owner="devteam" name="samtools_flagstat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fefd89ab563c"/>
     <repository owner="devteam" name="samtools_idxstats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fa5d3e61e429"/>
-    <repository owner="iuc" name="samtools_markdup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a389f74c3630"/>
-    <repository owner="iuc" name="samtools_merge" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="65a38e8c8e2a"/>
+    <repository owner="iuc" name="samtools_markdup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="40fa6c240105"/>
+    <repository owner="iuc" name="samtools_merge" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cae2794d2deb"/>
     <repository owner="devteam" name="samtools_mpileup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b61f5d6a7f25"/>
     <repository owner="devteam" name="samtools_phase" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1e5880498f52"/>
-    <repository owner="devteam" name="samtools_reheader" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d7b4851d1971"/>
-    <repository owner="devteam" name="samtools_sort" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a577ea614bed"/>
-    <repository owner="devteam" name="samtools_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bd850490c7f1"/>
-    <repository owner="devteam" name="samtools_stats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fed4aa48ba09"/>
-    <repository owner="iuc" name="samtools_view" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2dce91e11ca7"/>
-    <repository owner="iuc" name="samtools_coverage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c4ff13d2aab3"/>
+    <repository owner="devteam" name="samtools_reheader" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="85e38b31e8b3"/>
+    <repository owner="devteam" name="samtools_sort" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d54a4df48867"/>
+    <repository owner="devteam" name="samtools_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="818030fa6bbf"/>
+    <repository owner="devteam" name="samtools_stats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="541082d03bef"/>
+    <repository owner="iuc" name="samtools_view" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="32dc5f781059"/>
+    <repository owner="iuc" name="samtools_coverage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f4f7f632815d"/>
 </repositories>
\ No newline at end of file