# HG changeset patch
# User iuc
# Date 1751021686 0
# Node ID 64bcb51552fa0290ad0800629105d9157eb7c015
# Parent  39ea661047b820512ef354970acea850ce97911d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools commit 2f49183ddc89c7753d447c1dc40597d4a32eadfb

diff -r 39ea661047b8 -r 64bcb51552fa repository_dependencies.xml
--- a/repository_dependencies.xml	Thu Jun 19 12:57:32 2025 +0000
+++ b/repository_dependencies.xml	Fri Jun 27 10:54:46 2025 +0000
@@ -1,20 +1,20 @@
 <?xml version="1.0" ?>
 <repositories description="A suite of Galaxy tools designed to work with the SAMtools package.">
-    <repository owner="devteam" name="samtools_bedcov" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6856f8a01905"/>
-    <repository owner="devteam" name="samtools_calmd" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="26b4f9f98aca"/>
-    <repository owner="iuc" name="samtools_depth" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="971dc85e9441"/>
-    <repository owner="iuc" name="samtools_fastx" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b906586a6596"/>
-    <repository owner="iuc" name="samtools_fixmate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d2df79922531"/>
-    <repository owner="devteam" name="samtools_flagstat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fefd89ab563c"/>
-    <repository owner="devteam" name="samtools_idxstats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fa5d3e61e429"/>
-    <repository owner="iuc" name="samtools_markdup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="40fa6c240105"/>
-    <repository owner="iuc" name="samtools_merge" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cae2794d2deb"/>
-    <repository owner="devteam" name="samtools_mpileup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b61f5d6a7f25"/>
+    <repository owner="devteam" name="samtools_bedcov" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="762f63d4e25d"/>
+    <repository owner="devteam" name="samtools_calmd" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3d5853a84711"/>
+    <repository owner="iuc" name="samtools_depth" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="772919943459"/>
+    <repository owner="iuc" name="samtools_fastx" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9038311ed624"/>
+    <repository owner="iuc" name="samtools_fixmate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c05afbeaf42d"/>
+    <repository owner="devteam" name="samtools_flagstat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fbc6c28a5b14"/>
+    <repository owner="devteam" name="samtools_idxstats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c9d9f721a568"/>
+    <repository owner="iuc" name="samtools_markdup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="229ba92a3b55"/>
+    <repository owner="iuc" name="samtools_merge" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a7617eb92baf"/>
+    <repository owner="devteam" name="samtools_mpileup" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="32f6fffbc3e9"/>
     <repository owner="devteam" name="samtools_phase" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1e5880498f52"/>
-    <repository owner="devteam" name="samtools_reheader" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="85e38b31e8b3"/>
-    <repository owner="devteam" name="samtools_sort" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d54a4df48867"/>
+    <repository owner="devteam" name="samtools_reheader" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2d7f0d455ad4"/>
+    <repository owner="devteam" name="samtools_sort" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9ede25e390ff"/>
     <repository owner="devteam" name="samtools_split" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="818030fa6bbf"/>
-    <repository owner="devteam" name="samtools_stats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="541082d03bef"/>
-    <repository owner="iuc" name="samtools_view" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="32dc5f781059"/>
-    <repository owner="iuc" name="samtools_coverage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f4f7f632815d"/>
+    <repository owner="devteam" name="samtools_stats" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e221fe58c2f5"/>
+    <repository owner="iuc" name="samtools_view" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="48bbbcb692ce"/>
+    <repository owner="iuc" name="samtools_coverage" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ddbd49b892e5"/>
 </repositories>
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