Mercurial > repos > iuc > tasmanian_mismatch

changeset 1:b15fbf90db53 draft default tip

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"planemo upload for repository https://github.com/nebiolabs/tasmanian-mismatch commit d67025e9c7764d77f3f622b4d1ac0535b06c63de"
author iuc
date Sat, 24 Jul 2021 17:47:35 +0000
parents bc0b40dec7d2
children
files Tasmanian.xml test-data/test2-bed.output test-data/test2-nobed.output
diffstat 3 files changed, 10 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/Tasmanian.xml	Wed May 20 17:23:42 2020 -0400
+++ b/Tasmanian.xml	Sat Jul 24 17:47:35 2021 +0000
@@ -1,7 +1,12 @@
-<tool id="tasmanian_mismatch" name="Analysis of artifacts with Tasmanian" version="0.1.3" profile="18.09">
+<tool id="tasmanian_mismatch" name="Analysis of artifacts with Tasmanian" version="@TOOL_VERSION@" profile="20.05">
+  <description>Quantify, visualize and summarize mismatches in deep sequencing data</description>
+  <macros>
+	<token name="@TOOL_VERSION@">1.0.7</token>
+	<token name="@SAMTOOLS_VERSION@">1.13</token> 
+  </macros>
   <requirements>
-    <requirement type="package" version="0.1.3">tasmanian-mismatch</requirement> 
-    <requirement type="package" version="1.9">samtools</requirement>
+    <requirement type="package" version="@TOOL_VERSION@">tasmanian-mismatch</requirement> 
+    <requirement type="package" version="@SAMTOOLS_VERSION@">samtools</requirement>
   </requirements>
   <command detect_errors="exit_code">
     <![CDATA[
--- a/test-data/test2-bed.output	Wed May 20 17:23:42 2020 -0400
+++ b/test-data/test2-bed.output	Sat Jul 24 17:47:35 2021 +0000
@@ -150,4 +150,4 @@
 2,73,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,5,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 2,74,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,2,0,0,0,0,4,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 2,75,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,3,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
-2,76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,4,0,0,0,0,2,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
\ No newline at end of file
+2,76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,4,0,0,0,0,2,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
--- a/test-data/test2-nobed.output	Wed May 20 17:23:42 2020 -0400
+++ b/test-data/test2-nobed.output	Sat Jul 24 17:47:35 2021 +0000
@@ -150,4 +150,4 @@
 2,73,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,6,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 2,74,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,2,0,0,0,0,4,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
 2,75,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,0,0,4,0,0,0,0,1,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
-2,76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,4,0,0,0,0,2,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
\ No newline at end of file
+2,76,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,4,0,0,0,0,2,0,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0