# HG changeset patch # User iuc # Date 1439824583 14400 # Node ID 5c95bef081c77a0b2a6f28804b0476c2637400a9 planemo upload for repository https://github.com/galaxyproject/tools-diuc/blob/master/tools/taxonomy_krona_chart/ commit f96423e81ad876e5643da6d49030d5f3c07be32a diff -r 000000000000 -r 5c95bef081c7 COPYING --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/COPYING Mon Aug 17 11:16:23 2015 -0400 @@ -0,0 +1,23 @@ +Copyright © 2013-2014 CRS4 Srl. http://www.crs4.it/ +Created by: +Paolo Uva +Nicola Soranzo + +Permission is hereby granted, free of charge, to any person obtaining a +copy of this software and associated documentation files (the +"Software"), to deal in the Software without restriction, including +without limitation the rights to use, copy, modify, merge, publish, +distribute, sublicense, and/or sell copies of the Software, and to +permit persons to whom the Software is furnished to do so, subject to +the following conditions: + +The above copyright notice and this permission notice shall be included +in all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS +OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. +IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY +CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, +TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE +SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. diff -r 000000000000 -r 5c95bef081c7 taxonomy_krona_chart.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/taxonomy_krona_chart.xml Mon Aug 17 11:16:23 2015 -0400 @@ -0,0 +1,128 @@ + + from taxonomic profile + + krona + + ktImportText | sed -n 's/.*\(KronaTools [[:digit:].]\{1,\}\).*/\1/p' + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +**What it does** + +This tool renders results of a metagenomic profiling as a zoomable pie chart using Krona_. + + +.. _Krona: http://sourceforge.net/p/krona/home/krona/ + +------ + +**Krona options** + +The Galaxy version supports the following options:: + + -n Name of the highest level. + -c Combine data from each file, rather than creating separate datasets within the chart. + -d Maximum depth of wedges to include in the chart. + +----- + +**License and citation** + +This Galaxy tool is Copyright © 2013-2014 `CRS4 Srl.`_ and is released under the `MIT license`_. + +.. _CRS4 Srl.: http://www.crs4.it/ +.. _MIT license: http://opensource.org/licenses/MIT + +You can use this tool only if you agree to the license terms of: `Krona`_. + +.. _Krona: http://sourceforge.net/p/krona/home/krona/ + + + + + 10.1186/1471-2105-12-385 + 10.1093/bioinformatics/btu135 + + diff -r 000000000000 -r 5c95bef081c7 test-data/krona_test1.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/krona_test1.html Mon Aug 17 11:16:23 2015 -0400 @@ -0,0 +1,6617 @@ + + + + + + + + + + + + + +

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