diff test-data/results_2.txt @ 0:8529c9fd63ad draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit ef7cfd0c271f1ec40d3df3be4c91bb71028e85e8

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/results_2.txt	Tue Apr 02 09:03:16 2019 -0400
@@ -0,0 +1,72 @@
+
+TBProfiler report
+=================
+
+The following report has been generated by TBProfiler.
+
+Summary
+-------
+ID: tbprofiler
+Date: Mon Apr  1 10:38:29 2019
+Strain: lineage2.2.2
+Drug-resistance: Drug-resistant
+
+Lineage report
+--------------
+Lineage	Estimated Fraction	Family	Spoligotype	Rd
+lineage2	1.000	East-Asian	Beijing	RD105
+lineage2.2	1.000	East-Asian (Beijing)	Beijing-RD207	RD105;RD207
+lineage2.2.2	1.000	East-Asian (Beijing)	Beijing-RD105/RD207	RD105;RD207
+
+
+Resistance report
+-----------------
+Drug	Genotypic Resistance	Mutations
+ethionamide		
+levofloxacin		
+ofloxacin		
+pyrazinamide		
+amikacin		
+delamanid		
+cycloserine		
+rifampicin	R	rpoB p.Asp435Val (1.00)
+fluoroquinolones		
+para-aminosalicylic acid		
+capreomycin		
+moxifloxacin		
+ciprofloxacin		
+ethambutol		
+isoniazid		
+aminoglycosides		
+streptomycin		
+linezolid		
+kanamycin		
+bedaquiline		
+clofazimine		
+
+
+Other variants report
+---------------------
+Genome Position	Locus Tag	Change	Estimated Fraction
+763031	Rv0667	c.3225T>C	1.000
+1834177	Rv1630	c.636A>C	1.000
+
+
+Analysis pipeline specifications
+--------------------------------
+Version: 2.1.1
+Analysis	Program
+Mapping	bwa
+Variant Calling	BCFtools
+
+
+Disclaimer
+----------
+This tool is for Research Use Only and is offered free foruse. The London School
+of Hygiene and Tropical Medicine shall have no liability for any loss or damages
+of any kind, however sustained relating to the use of this tool.
+
+Citation
+--------
+Coll, F. et al. Rapid determination of anti-tuberculosis drug resistance from
+whole-genome sequences. Genome Medicine 7, 51. 2015