view test-data/example.vcf @ 10:37213cf56392 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit fd32d6e8b7b8da5f7147465a17237491bdaaaea9"
author iuc
date Thu, 29 Jul 2021 08:53:16 +0000
parents 19793eecc9f0
children
line wrap: on
line source

##fileformat=VCFv4.0
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele Count">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Number of Alleles With Data">
##INFO=<ID=AF,Number=.,Type=Float,Description="Allele Frequency">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	X1	X2	X3	X4	X5	X6
1	10	1:10	A	T	100	PASS	NS=5;AC=0;AN=10;AF=0.000000	GT	0/0	./.	0/0	0/0	0/0	0/0
1	20	1:20	G	C	100	PASS	NS=0;AC=0;AN=0	GT	./.	./.	./.	./.	./.	./.
1	30	1:30	C	A	100	PASS	NS=6;AC=0;AN=12;AF=0.000000	GT	0/0	0/0	0/0	0/0	0/0	0/0
1	40	1:40	A	C	100	PASS	NS=6;AC=0;AN=12;AF=0.000000	GT	0/0	0/0	0/0	0/0	0/0	0/0
1	10000	1:10000	G	C	100	PASS	NS=6;AC=0;AN=12;AF=0.000000	GT	0/0	0/0	0/0	0/0	0/0	0/0
1	20000	1:20000	T	A	100	PASS	NS=6;AC=12;AN=12;AF=1.000000	GT	1/1	1/1	1/1	1/1	1/1	1/1
4	5000	4:5000	A	T	100	PASS	NS=6;AC=12;AN=12;AF=1.000000	GT	1/1	1/1	1/1	1/1	1/1	1/1
4	6000	4:6000	C	T	100	PASS	NS=6;AC=11;AN=12;AF=0.916667	GT	1/1	1/1	1/1	1/1	0/1	1/1
X	800	X:800	A	C	100	PASS	NS=6;AC=12;AN=12;AF=1.000000	GT	1/1	1/1	1/1	1/1	1/1	1/1
X	900	X:900	A	T	100	PASS	NS=6;AC=12;AN=12;AF=1.000000	GT	1/1	1/1	1/1	1/1	1/1	1/1
X	1000	X:1000	T	G	100	PASS	NS=5;AC=10;AN=10;AF=1.000000	GT	1/1	1/1	1/1	1/1	1/1	./.