Mercurial > repos > iuc > tbprofiler
view test-data/results_2.txt @ 12:c6f7442355e9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tb-profiler commit 022318801a201c48ca0bb7f3d7f763b373d27076"
| author | iuc |
|---|---|
| date | Fri, 27 Aug 2021 09:44:05 +0000 |
| parents | 8529c9fd63ad |
| children |
line wrap: on
line source
TBProfiler report ================= The following report has been generated by TBProfiler. Summary ------- ID: tbprofiler Date: Mon Apr 1 10:38:29 2019 Strain: lineage2.2.2 Drug-resistance: Drug-resistant Lineage report -------------- Lineage Estimated Fraction Family Spoligotype Rd lineage2 1.000 East-Asian Beijing RD105 lineage2.2 1.000 East-Asian (Beijing) Beijing-RD207 RD105;RD207 lineage2.2.2 1.000 East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207 Resistance report ----------------- Drug Genotypic Resistance Mutations ethionamide levofloxacin ofloxacin pyrazinamide amikacin delamanid cycloserine rifampicin R rpoB p.Asp435Val (1.00) fluoroquinolones para-aminosalicylic acid capreomycin moxifloxacin ciprofloxacin ethambutol isoniazid aminoglycosides streptomycin linezolid kanamycin bedaquiline clofazimine Other variants report --------------------- Genome Position Locus Tag Change Estimated Fraction 763031 Rv0667 c.3225T>C 1.000 1834177 Rv1630 c.636A>C 1.000 Analysis pipeline specifications -------------------------------- Version: 2.1.1 Analysis Program Mapping bwa Variant Calling BCFtools Disclaimer ---------- This tool is for Research Use Only and is offered free foruse. The London School of Hygiene and Tropical Medicine shall have no liability for any loss or damages of any kind, however sustained relating to the use of this tool. Citation -------- Coll, F. et al. Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome Medicine 7, 51. 2015