vcf_with_no_protein Report


CHR GENE LOCUS PRODUCT IS_SNV EFFECT POS REF ALT BIOTYPE NUCLEOTIDE CONSEQUENCE IMPACT PATHWAY
Chromosome Rv3753c Rv3753c O69720 True missense_variant 4200220 G A protein_coding c.2C>T p.Thr1Met MODERATE

NA

Chromosome Rv3756c Rv3756c O69722 True synonymous_variant 4202383 C A protein_coding c.231G>T p.Val77Val LOW

ABC transporters

Chromosome Rv3759c Rv3759c O69725 True missense_variant 4205120 G A protein_coding c.254C>T p.Pro85Leu MODERATE

ABC transporters

Chromosome Rv3764c Rv3764c O69729 True missense_variant 4210876 C T protein_coding c.134G>A p.Arg45His MODERATE

NA

Chromosome Rv3769 Rv3769 P72036 True missense_variant 4214747 C T protein_coding c.133C>T p.His45Tyr MODERATE

NA

Chromosome Rv3770c Rv3770c P72037 True missense_variant 4215484 C G protein_coding c.292G>C p.Ala98Pro MODERATE

NA

Chromosome Rv3772 Rv3772 P9WML5 True missense_variant 4217557 G A protein_coding c.424G>A p.Ala142Thr MODERATE

Phenylalanine, tyrosine and tryptophan biosynthesis

Phenylalanine metabolism

Histidine metabolism

Tyrosine metabolism

Chromosome Rv3777 Rv3777 P72043 True missense_variant 4223172 C T protein_coding c.479C>T p.Ala160Val MODERATE

NA

Chromosome Rv3785 Rv3785 P9WKX1 True synonymous_variant 4232327 G A protein_coding c.1008G>A p.Arg336Arg LOW

NA

Chromosome Rv3792 Rv3792 P9WN03 True synonymous_variant 4238963 C T protein_coding c.1032C>T p.His344His LOW

Arabinogalactan biosynthesis - Mycobacterium

Chromosome Rv3792 Rv3792 P9WN03 True missense_variant 4239274 C G protein_coding c.1343C>G p.Pro448Arg MODERATE

Arabinogalactan biosynthesis - Mycobacterium

Chromosome Rv3793 Rv3793 P9WNL5 True missense_variant 4240671 T C protein_coding c.809T>C p.Ile270Thr MODERATE

Lipoarabinomannan (LAM) biosynthesis

Chromosome Rv3795 Rv3795 P9WNL7 True missense_variant 4247429 A G protein_coding c.916A>G p.Met306Val MODERATE

Arabinogalactan biosynthesis - Mycobacterium

Chromosome Rv3795 Rv3795 P9WNL7 True missense_variant 4247646 C A protein_coding c.1133C>A p.Ala378Glu MODERATE

Arabinogalactan biosynthesis - Mycobacterium

Chromosome Rv3797 Rv3797 O53577 True synonymous_variant 4251297 C G protein_coding c.213C>G p.Gly71Gly LOW

NA

Chromosome Rv3798 Rv3798

NA

True missense_variant 4254290 T G protein_coding c.1298T>G p.Leu433Arg MODERATE

NA

Chromosome Rv3799c Rv3799c O53578 True missense_variant 4254478 G A protein_coding c.1471C>T p.His491Tyr MODERATE

NA

Chromosome Rv3801c Rv3801c O53580 True missense_variant 4261499 A G protein_coding c.1568T>C p.Val523Ala MODERATE

NA

CHR GENE LOCUS PRODUCT TYPE EFFECT POS REF ALT BIOTYPE NUCLEOTIDE CONSEQUENCE IMPACT PATHWAY