Mercurial > repos > iuc > tbvcfreport
comparison test-data/rif_resistant_drug_resistance_report.html @ 0:02d81b994ef5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f337505deb06b66961f77a64bfae244f88c6a865"
author | iuc |
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date | Thu, 29 Aug 2019 08:18:59 -0400 |
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children | adc0645b945c |
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1 <!DOCTYPE html> | |
2 <html> | |
3 | |
4 <head> | |
5 <title></title> | |
6 <meta charset="utf-8"> | |
7 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> | |
8 <link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet" | |
9 integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous"> | |
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12 href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.bootstrap4.min.css"> | |
13 <link rel="stylesheet" type="text/css" | |
14 href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.dataTables.min.css"> | |
15 </head> | |
16 | |
17 <body> | |
18 <div class="container"> | |
19 <div class="row"> | |
20 <h2 class="mt-5"> | |
21 rif_resistant Report | |
22 </h2> | |
23 </div> | |
24 <div class="row"> | |
25 <table class="table table-striped table-hover"> | |
26 <caption>Lineage Info</caption> | |
27 <thead class="thead-light"> | |
28 <tr> | |
29 <th scope="col">Species</th> | |
30 <th scope="col">Lineage</th> | |
31 <th scope="col">Sub-lineage</th> | |
32 <th scope="col">Agreement with SNPs from this lineage</th> | |
33 </tr> | |
34 </thead> | |
35 <tbody> | |
36 <tr> | |
37 <td>M. tuberculosis</td> | |
38 <td>Lineage 4</td> | |
39 <td> | |
40 Not Available | |
41 </td> | |
42 <td>99%</td> | |
43 </tr> | |
44 </tbody> | |
45 </table> | |
46 </div> | |
47 <hr> | |
48 <div class="row"> | |
49 <h3 class="mb-2"> | |
50 <a class="text-body" href="https://github.com/jodyphelan/TBProfiler" target="_blank" | |
51 rel="noreferrer noopener">TBProfiler</a> | |
52 Drug Resistance Report | |
53 </h3> | |
54 </div> | |
55 <div class="row"> | |
56 <table id="drug_resistance" class="table table-hover table-bordered table-striped table-sm" cellspacing="0"> | |
57 <caption class="mb-3 text-info"> | |
58 <strong>Disclaimer</strong>: | |
59 Drug resistance predictions are for <strong>Research Purposes Only</strong> and are produced by | |
60 <a class="text-info" href="https://github.com/jodyphelan/TBProfiler" target="_blank" | |
61 rel="noreferrer noopener">TBProfiler</a>. | |
62 </caption> | |
63 <thead class="thead-light"> | |
64 <tr> | |
65 <th scope="col">Drug</th> | |
66 <th scope="col">Resistance</th> | |
67 <th scope="col">Supporting Mutations</th> | |
68 </tr> | |
69 </thead> | |
70 <tr> | |
71 <td>Isoniazid</td> | |
72 <td>S</td> | |
73 <td></td> | |
74 </tr> | |
75 <tr> | |
76 <td>Rifampicin</td> | |
77 <td>R</td> | |
78 <td> <a target="_blank" href="https://explorer.sanbi.ac.za/gene?q=rpoB" | |
79 rel="noreferrer noopener">rpoB</a> | |
80 (1.0 p.Asp435Val) | |
81 </td> | |
82 </tr> | |
83 <tr> | |
84 <td>Ethambutol</td> | |
85 <td>S</td> | |
86 <td></td> | |
87 </tr> | |
88 <tr> | |
89 <td>Pyrazinamide</td> | |
90 <td>S</td> | |
91 <td></td> | |
92 </tr> | |
93 <tr> | |
94 <td>Streptomycin</td> | |
95 <td>S</td> | |
96 <td></td> | |
97 </tr> | |
98 <tr> | |
99 <td>Ethionamide</td> | |
100 <td>S</td> | |
101 <td></td> | |
102 </tr> | |
103 <tr> | |
104 <td>Fluoroquinolones</td> | |
105 <td>S</td> | |
106 <td></td> | |
107 </tr> | |
108 <tr> | |
109 <td>Amikacin</td> | |
110 <td>S</td> | |
111 <td></td> | |
112 </tr> | |
113 <tr> | |
114 <td>Capreomycin</td> | |
115 <td>S</td> | |
116 <td></td> | |
117 </tr> | |
118 <tr> | |
119 <td>Kanamycin</td> | |
120 <td>S</td> | |
121 <td></td> | |
122 </tr> | |
123 <tr> | |
124 <td>Para-aminosalicylic acid</td> | |
125 <td>S</td> | |
126 <td></td> | |
127 </tr> | |
128 <tr> | |
129 <td>Linezolid</td> | |
130 <td>S</td> | |
131 <td></td> | |
132 </tr> | |
133 <tr> | |
134 <td>Cycloserine</td> | |
135 <td>S</td> | |
136 <td></td> | |
137 </tr> | |
138 <tr> | |
139 <td>Delaminid</td> | |
140 <td>S</td> | |
141 <td></td> | |
142 </tr> | |
143 <tr> | |
144 <td>Clofazimine</td> | |
145 <td>S</td> | |
146 <td></td> | |
147 </tr> | |
148 <tr> | |
149 <td>Bedaquiline</td> | |
150 <td>S</td> | |
151 <td></td> | |
152 </tr> | |
153 </table> | |
154 </div> | |
155 <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" | |
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202 </html> |