Mercurial > repos > iuc > tbvcfreport

comparison test-data/rif_resistant_variants_report.html @ 0:02d81b994ef5 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f337505deb06b66961f77a64bfae244f88c6a865"
author iuc
date Thu, 29 Aug 2019 08:18:59 -0400
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children adc0645b945c
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-1:000000000000 0:02d81b994ef5
1 <!DOCTYPE html>
2 <html>
3
4 <head>
5 <title></title>
6 <meta charset="utf-8">
7 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
8 <link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet"
9 integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
10 <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.19/css/dataTables.bootstrap4.min.css">
11 <link rel="stylesheet" type="text/css"
12 href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.bootstrap4.min.css">
13 <link rel="stylesheet" type="text/css"
14 href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.dataTables.min.css">
15 </head>
16
17 <body>
18 <div class="container">
19 <div class="row">
20 <h2 class="mt-5">
21 rif_resistant Report
22 </h2>
23 </div>
24 <div class="row">
25 <table class="table table-striped table-hover">
26 <caption>Lineage Info</caption>
27 <thead class="thead-light">
28 <tr>
29 <th scope="col">Species</th>
30 <th scope="col">Lineage</th>
31 <th scope="col">Sub-lineage</th>
32 <th scope="col">Agreement with SNPs from this lineage</th>
33 </tr>
34 </thead>
35 <tbody>
36 <tr>
37 <td>M. tuberculosis</td>
38 <td>Lineage 4</td>
39 <td>
40 Not Available
41 </td>
42 <td>99%</td>
43 </tr>
44 </tbody>
45 </table>
46 </div>
47 <hr>
48 <div>
49 <p>No variant data was found for this VCF file. Is it a <a href="http://snpeff.sourceforge.net/SnpEff_manual.html"
50 target="_blank" rel="noreferrer noopener">SnpEff</a> annotated VCF file?</p>
51 <p>Kindly check if the '<strong>ANN</strong>' field is present.</p>
52 </div>
53 <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js"
54 integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous">
55 </script>
56 <script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.3/umd/popper.min.js"
57 integrity="sha384-ZMP7rVo3mIykV+2+9J3UJ46jBk0WLaUAdn689aCwoqbBJiSnjAK/l8WvCWPIPm49" crossorigin="anonymous">
58 </script>
59 <script src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/js/bootstrap.min.js"
60 integrity="sha384-ChfqqxuZUCnJSK3+MXmPNIyE6ZbWh2IMqE241rYiqJxyMiZ6OW/JmZQ5stwEULTy" crossorigin="anonymous">
61 </script>
62 <script type="text/javascript" charset="utf8"
63 src="https://cdn.datatables.net/1.10.19/js/jquery.dataTables.min.js"></script>
64 <script type="text/javascript" charset="utf8"
65 src="https://cdn.datatables.net/1.10.19/js/dataTables.bootstrap4.min.js"></script>
66 <script type="text/javascript" charset="utf8"
67 src="https://cdn.datatables.net/buttons/1.5.2/js/dataTables.buttons.min.js"></script>
68 <script type="text/javascript" charset="utf8"
69 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.bootstrap4.min.js"></script>
70 <script type="text/javascript" charset="utf8"
71 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.flash.min.js"></script>
72 <script type="text/javascript" charset="utf8"
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74 <script type="text/javascript" charset="utf8"
75 src="https://cdnjs.cloudflare.com/ajax/libs/pdfmake/0.1.36/pdfmake.min.js"></script>
76 <script type="text/javascript" charset="utf8"
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78 <script type="text/javascript" charset="utf8"
79 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.html5.min.js"></script>
80 <script type="text/javascript" charset="utf8"
81 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.print.min.js"></script>
82 <script type="text/javascript" charset="utf8"
83 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.colVis.min.js"></script>
84 <script type="text/javascript" language="javascript" class="init">
85 $(function () {
86 var table = $('#vcfreport').DataTable({
87 lengthChange: false,
88 buttons: [{
89 extend: 'csv',
90 text: 'Download CSV',
91 filename: 'rif_resistant'
92 }]
93 });
94 table.buttons().container().appendTo('#vcfreport_wrapper .col-md-6:eq(0)');
95 });
96 </script>
97 </div>
98 </body>
99
100 </html>