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comparison test-data/rif_resistant_variants_report_with_lineage.txt @ 3:42818629ec4c draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
author iuc
date Fri, 31 May 2024 20:06:49 +0000
parents adc0645b945c
children
comparison
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2:4934c0ac6197 3:42818629ec4c
1 #Rif_resistant Report 1 #Rif_resistant Report
2 #Lineage Family Spoligotype RD Agreement 2 #Lineage Support Family RD
3 lineage2 East-Asian Beijing RD105 1.0 3 lineage2 0.9940119760479041 East-Asian RD105
4 lineage2.2 East-Asian (Beijing) Beijing-RD207 RD105;RD207 1.0 4 lineage2.2.2 1.0 East-Asian (Beijing) RD105;RD207
5 lineage2.2.2 East-Asian (Beijing) Beijing-RD105/RD207 RD105;RD207 1.0
6 5
7 #CHR GENE IDENTIFIER PRODUCT TYPE ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHAWAY 6 #CHR GENE IDENTIFIER PRODUCT IS_SNV ANNOTATION POS REF ALT CONSEQUENCE IMPACT PATHWAY
7 Chromosome Rv0014c GENE_Rv0014c NOPROTEIN True synonymous_variant 15890 G A p.Ser527Ser LOW
8 Chromosome Rv0127 GENE_Rv0127 NOPROTEIN True synonymous_variant 154990 G T p.Arg253Arg LOW
9 Chromosome Rv0284 GENE_Rv0284 NOPROTEIN True synonymous_variant 346693 G T p.Ser353Ser LOW
10 Chromosome Rv0372c GENE_Rv0372c NOPROTEIN True synonymous_variant 449194 G A p.Gly64Gly LOW
11 Chromosome Rv0411c GENE_Rv0411c NOPROTEIN True synonymous_variant 497491 G A p.Asp270Asp LOW
12 Chromosome Rv0667 GENE_Rv0667 NOPROTEIN True missense_variant 761110 A T p.Asp435Val MODERATE
13 Chromosome Rv0715 GENE_Rv0715 NOPROTEIN True synonymous_variant 811753 C T p.His4His LOW
14 Chromosome Rv1391 GENE_Rv1391 NOPROTEIN True synonymous_variant 1565566 C T p.Pro42Pro LOW
15 Chromosome Rv1630 GENE_Rv1630 NOPROTEIN True synonymous_variant 1834177 A C p.Arg212Arg LOW
16 Chromosome Rv1640c GENE_Rv1640c NOPROTEIN True synonymous_variant 1849051 C T p.Pro995Pro LOW
17 Chromosome Rv2231c GENE_Rv2231c NOPROTEIN True synonymous_variant 2505085 G A p.Ala205Ala LOW
18 Chromosome Rv2268c GENE_Rv2268c NOPROTEIN True synonymous_variant 2543395 T C p.Glu294Glu LOW
19 Chromosome Rv2357c GENE_Rv2357c NOPROTEIN True synonymous_variant 2640807 G A p.Val86Val LOW
20 Chromosome Rv2472 GENE_Rv2472 NOPROTEIN True synonymous_variant 2775361 C T p.Arg30Arg LOW
21 Chromosome Rv2483c GENE_Rv2483c NOPROTEIN True synonymous_variant 2789798 G T p.Arg409Arg LOW
22 Chromosome Rv3109 GENE_Rv3109 NOPROTEIN True synonymous_variant 3477942 A G p.Thr98Thr LOW
23 Chromosome Rv3210c GENE_Rv3210c NOPROTEIN True synonymous_variant 3587446 G A p.Leu32Leu LOW
24 Chromosome Rv3799c GENE_Rv3799c NOPROTEIN True synonymous_variant 4254431 G A p.Asp506Asp LOW
25 Chromosome Rv3799c GENE_Rv3799c NOPROTEIN True missense_variant 4254477 T C p.His491Arg MODERATE