Mercurial > repos > iuc > tbvcfreport
comparison tbvcfreport.xml @ 1:adc0645b945c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit 9cd78488b53cde8d3139d2d71ec500e2c91b9335"
| author | iuc |
|---|---|
| date | Wed, 07 Jul 2021 09:22:44 +0000 |
| parents | 02d81b994ef5 |
| children | 4934c0ac6197 |
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| 0:02d81b994ef5 | 1:adc0645b945c |
|---|---|
| 1 <?xml version="1.0" ?> | 1 <?xml version="1.0" ?> |
| 2 <tool id="tbvcfreport" name="TB Variant Report" version="@TOOL_VERSION@+galaxy0"> | 2 <tool id="tbvcfreport" name="TB Variant Report" version="@TOOL_VERSION@+galaxy0"> |
| 3 <description>- generate HTML report from SnpEff annotated M.tb VCF(s)</description> | 3 <description>- generate HTML report from SnpEff annotated M.tb VCF(s)</description> |
| 4 <macros> | 4 <macros> |
| 5 <token name="@TOOL_VERSION@">0.1.7</token> | 5 <token name="@TOOL_VERSION@">0.1.8</token> |
| 6 </macros> | 6 </macros> |
| 7 <requirements> | 7 <requirements> |
| 8 <requirement type="package" version="@TOOL_VERSION@">tbvcfreport</requirement> | 8 <requirement type="package" version="@TOOL_VERSION@">tbvcfreport</requirement> |
| 9 </requirements> | 9 </requirements> |
| 10 <command detect_errors="exit_code"> | 10 <command detect_errors="exit_code"> |
| 84 <output name="variants_report_txt" compare="diff" lines_diff="2" file="rif_resistant_variants_report.txt" ftype="txt" /> | 84 <output name="variants_report_txt" compare="diff" lines_diff="2" file="rif_resistant_variants_report.txt" ftype="txt" /> |
| 85 </test> | 85 </test> |
| 86 <test> | 86 <test> |
| 87 <param name="input_vcf" value="rif_resistant.vcf" ftype="vcf" /> | 87 <param name="input_vcf" value="rif_resistant.vcf" ftype="vcf" /> |
| 88 <param name="tbprofiler_json" value="rif_resistant.results.json" ftype="json" /> | 88 <param name="tbprofiler_json" value="rif_resistant.results.json" ftype="json" /> |
| 89 <output name="variants_report_html" compare="diff" lines_diff="2" file="rif_resistant_variants_report.html" ftype="html" /> | 89 <output name="variants_report_html" compare="diff" lines_diff="2" file="rif_resistant_variants_report_with_lineage.html" ftype="html" /> |
| 90 <output name="variants_report_txt" compare="diff" lines_diff="2" file="rif_resistant_variants_report.txt" ftype="txt" /> | 90 <output name="variants_report_txt" compare="diff" lines_diff="2" file="rif_resistant_variants_report_with_lineage.txt" ftype="txt" /> |
| 91 <output name="drug_resistance_report_html" file="rif_resistant_drug_resistance_report.html" lines_diff="2" ftype="html" /> | 91 <output name="drug_resistance_report_html" file="rif_resistant_drug_resistance_report.html" lines_diff="2" ftype="html" /> |
| 92 <output name="drug_resistance_report_txt" compare="diff" lines_diff="2" file="rif_resistant_drug_resistance_report.txt" ftype="txt" /> | 92 <output name="drug_resistance_report_txt" compare="diff" lines_diff="2" file="rif_resistant_drug_resistance_report.txt" ftype="txt" /> |
| 93 </test> | 93 </test> |
| 94 </tests> | 94 </tests> |
| 95 <help> | 95 <help> |