Mercurial > repos > iuc > tbvcfreport

comparison test-data/rif_resistant_variants_report_with_lineage.html @ 1:adc0645b945c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit 9cd78488b53cde8d3139d2d71ec500e2c91b9335"
author iuc
date Wed, 07 Jul 2021 09:22:44 +0000
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0:02d81b994ef5 1:adc0645b945c
1 <!DOCTYPE html>
2 <html>
3
4 <head>
5 <title></title>
6 <meta charset="utf-8">
7 <meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
8 <link href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/css/bootstrap.min.css" rel="stylesheet"
9 integrity="sha384-MCw98/SFnGE8fJT3GXwEOngsV7Zt27NXFoaoApmYm81iuXoPkFOJwJ8ERdknLPMO" crossorigin="anonymous">
10 <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.19/css/dataTables.bootstrap4.min.css">
11 <link rel="stylesheet" type="text/css"
12 href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.bootstrap4.min.css">
13 <link rel="stylesheet" type="text/css"
14 href="https://cdn.datatables.net/buttons/1.5.2/css/buttons.dataTables.min.css">
15 </head>
16
17 <body>
18 <div class="container">
19 <div class="row">
20 <h2 class="mt-5">
21 rif_resistant Report
22 </h2>
23 </div>
24 <hr>
25 <div class="row justify-content-center align-items-center">
26 <table id="lineagereport" class="table table-bordered table-striped table-hover table-sm" cellspacing="0">
27 <thead class="thead-light">
28 <tr>
29 <th scope="col">Lineage</th>
30 <th scope="col">Family</th>
31 <th scape="col">Spoligotype</th>
32 <th scope="col">RD</th>
33 <th scope="col">Agreement</th>
34 </tr>
35 </thead>
36 <tbody>
37 <tr>
38 <td>lineage2</td>
39 <td>East-Asian</td>
40 <td>Beijing</td>
41 <td>RD105</td>
42 <td>1.0</td>
43 </tr>
44 <tr>
45 <td>lineage2.2</td>
46 <td>East-Asian (Beijing)</td>
47 <td>Beijing-RD207</td>
48 <td>RD105;RD207</td>
49 <td>1.0</td>
50 </tr>
51 <tr>
52 <td>lineage2.2.2</td>
53 <td>East-Asian (Beijing)</td>
54 <td>Beijing-RD105/RD207</td>
55 <td>RD105;RD207</td>
56 <td>1.0</td>
57 </tr>
58 </tbody>
59 </table>
60 </div>
61 <div>
62 <p>No variant data was found for this VCF file. Is it a <a href="http://snpeff.sourceforge.net/SnpEff_manual.html"
63 target="_blank" rel="noreferrer noopener">SnpEff</a> annotated VCF file?</p>
64 <p>Kindly check if the '<strong>ANN</strong>' field is present.</p>
65 </div>
66 <script src="https://code.jquery.com/jquery-3.3.1.slim.min.js"
67 integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous">
68 </script>
69 <script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.3/umd/popper.min.js"
70 integrity="sha384-ZMP7rVo3mIykV+2+9J3UJ46jBk0WLaUAdn689aCwoqbBJiSnjAK/l8WvCWPIPm49" crossorigin="anonymous">
71 </script>
72 <script src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/js/bootstrap.min.js"
73 integrity="sha384-ChfqqxuZUCnJSK3+MXmPNIyE6ZbWh2IMqE241rYiqJxyMiZ6OW/JmZQ5stwEULTy" crossorigin="anonymous">
74 </script>
75 <script type="text/javascript" charset="utf8"
76 src="https://cdn.datatables.net/1.10.19/js/jquery.dataTables.min.js"></script>
77 <script type="text/javascript" charset="utf8"
78 src="https://cdn.datatables.net/1.10.19/js/dataTables.bootstrap4.min.js"></script>
79 <script type="text/javascript" charset="utf8"
80 src="https://cdn.datatables.net/buttons/1.5.2/js/dataTables.buttons.min.js"></script>
81 <script type="text/javascript" charset="utf8"
82 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.bootstrap4.min.js"></script>
83 <script type="text/javascript" charset="utf8"
84 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.flash.min.js"></script>
85 <script type="text/javascript" charset="utf8"
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87 <script type="text/javascript" charset="utf8"
88 src="https://cdnjs.cloudflare.com/ajax/libs/pdfmake/0.1.36/pdfmake.min.js"></script>
89 <script type="text/javascript" charset="utf8"
90 src="https://cdnjs.cloudflare.com/ajax/libs/pdfmake/0.1.36/vfs_fonts.js"></script>
91 <script type="text/javascript" charset="utf8"
92 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.html5.min.js"></script>
93 <script type="text/javascript" charset="utf8"
94 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.print.min.js"></script>
95 <script type="text/javascript" charset="utf8"
96 src="https://cdn.datatables.net/buttons/1.5.2/js/buttons.colVis.min.js"></script>
97 <script type="text/javascript" language="javascript" class="init">
98 $(function () {
99 var table = $('#vcfreport').DataTable({
100 lengthChange: false,
101 buttons: [{
102 extend: 'csv',
103 text: 'Download CSV',
104 filename: 'rif_resistant'
105 }]
106 });
107 table.buttons().container().appendTo('#vcfreport_wrapper .col-md-6:eq(0)');
108 });
109 </script>
110 </div>
111 </body>
112
113 </html>