Mercurial > repos > iuc > tbvcfreport
view test-data/rif_resistant.results.json @ 3:42818629ec4c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/tbvcfreport commit f54e7cfd572498517dde7fe6afab47a20e3fcb17
| author | iuc |
|---|---|
| date | Fri, 31 May 2024 20:06:49 +0000 |
| parents | 02d81b994ef5 |
| children |
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{ "id": "tbprofiler", "timestamp": "2024-05-31T15:43:38.437239", "pipeline": { "software_version": "6.2.1", "db_version": { "name": "tbdb", "commit": "82777ea", "Author": "Jody Phelan <jody.phelan@lshtm.ac.uk>", "Date": "Sun Mar 17 01:14:00 2024 +0000" }, "software": [ { "process": "variant_calling", "software": "freebayes" }, { "process": "depth_calculation", "software": "samtools" } ] }, "notes": [], "lineage": [ { "fraction": 1.0, "lineage": "lineage2.2.2", "family": "East-Asian (Beijing)", "rd": "RD105;RD207", "support": [ { "id": "lineage2.2.2", "chrom": "Chromosome", "pos": 154990, "target_allele_count": 47, "other_allele_count": 0, "target_allele_percent": 100.0 }, { "id": "lineage2.2.2", "chrom": "Chromosome", "pos": 346693, "target_allele_count": 23, "other_allele_count": 0, "target_allele_percent": 100.0 }, { "id": "lineage2.2.2", "chrom": "Chromosome", "pos": 449194, "target_allele_count": 22, "other_allele_count": 0, "target_allele_percent": 100.0 }, { "id": "lineage2.2.2", "chrom": "Chromosome", "pos": 1565566, "target_allele_count": 46, "other_allele_count": 0, "target_allele_percent": 100.0 }, { "id": "lineage2.2.2", "chrom": "Chromosome", "pos": 2640807, "target_allele_count": 49, "other_allele_count": 0, "target_allele_percent": 100.0 } ] }, { "fraction": 0.9940119760479041, "lineage": "lineage2", "family": "East-Asian", "rd": "RD105", "support": [ { "id": "lineage2", "chrom": "Chromosome", "pos": 497491, "target_allele_count": 64, "other_allele_count": 0, "target_allele_percent": 100.0 }, { "id": "lineage2", "chrom": "Chromosome", "pos": 811753, "target_allele_count": 51, "other_allele_count": 1, "target_allele_percent": 98.07692307692307 }, { "id": "lineage2", "chrom": "Chromosome", "pos": 4254431, "target_allele_count": 51, "other_allele_count": 0, "target_allele_percent": 100.0 } ] }, { "fraction": 1.0, "lineage": "lineage2.2", "family": "East-Asian (Beijing)", "rd": "RD105;RD207", "support": [ { "id": "lineage2.2", "chrom": "Chromosome", "pos": 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