Mercurial > repos > iuc > telescope_assign
view test-data/telescope-in1.gtf @ 0:66ff74923224 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/telescope commit 2ad29725263c29d7612d2e150801c212eb9a2463"
| author | iuc |
|---|---|
| date | Tue, 03 Sep 2019 18:12:09 -0400 |
| parents | |
| children |
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### HML2_1p36.21a ### chr1 rmsk gene 12780115 12785935 . - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0001"; model_cov "4813"; model_pct "63.9"; chr1 rmsk exon 12780115 12784947 27645 - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0001"; repClass "LTR"; repEnd "4816"; repFamily "ERVK"; repLeft "3"; repStart "-2720"; chr1 rmsk exon 12784950 12785935 7601 - . gene_id "HML2_1p36.21a"; transcript_id "HML2_1p36.21a"; locus "HML2_1p36.21a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0001"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_1p36.21b ### chr1 rmsk gene 13012447 13021988 . - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0002"; model_cov "7448"; model_pct "98.8"; chr1 rmsk exon 13012447 13013444 8041 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 13013534 13020171 21384 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "743"; repStart "-89"; chr1 rmsk exon 13020264 13020996 4529 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "2"; repStart "-6790"; chr1 rmsk exon 13020998 13021988 7851 - . gene_id "HML2_1p36.21b"; transcript_id "HML2_1p36.21b"; locus "HML2_1p36.21b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0002"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_1p36.21c ### chr1 rmsk gene 13206972 13216513 . + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0003"; model_cov "7448"; model_pct "98.8"; chr1 rmsk exon 13206972 13207962 7851 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 13207964 13208696 4529 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "2"; chr1 rmsk exon 13208789 13215426 21447 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743"; chr1 rmsk exon 13215516 13216513 7965 + . gene_id "HML2_1p36.21c"; transcript_id "HML2_1p36.21c"; locus "HML2_1p36.21c"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0003"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_1p36.21d ### chr1 rmsk gene 13352736 13362257 . + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0004"; model_cov "7449"; model_pct "98.8"; chr1 rmsk exon 13352736 13353726 7746 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 13353727 13354460 4505 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1"; chr1 rmsk exon 13354553 13361170 21857 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743"; chr1 rmsk exon 13361260 13362257 8099 + . gene_id "HML2_1p36.21d"; transcript_id "HML2_1p36.21d"; locus "HML2_1p36.21d"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0004"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_1p34.3 ### chr1 rmsk gene 36488984 36491127 . - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0006"; model_cov "1096"; model_pct "14.5"; chr1 rmsk exon 36488984 36489934 5851 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 36490048 36490378 2634 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "7417"; repFamily "ERVK"; repLeft "7087"; repStart "-119"; chr1 rmsk exon 36490359 36491127 5815 - . gene_id "HML2_1p34.3"; transcript_id "HML2_1p34.3"; locus "HML2_1p34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0006"; repClass "LTR"; repEnd "5868"; repFamily "ERVK"; repLeft "5102"; repStart "-1668"; ### HML2_1p31.1 ### chr1 rmsk gene 75377086 75383458 . + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0007"; model_cov "4355"; model_pct "57.8"; chr1 rmsk exon 75377086 75378053 8811 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 75378054 75380597 22845 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "2543"; repFamily "ERVK"; repLeft "-4993"; repStart "1"; chr1 rmsk exon 75380582 75380780 1643 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5336"; chr1 rmsk exon 75380780 75382395 14607 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr1 rmsk exon 75382491 75383458 8811 + . gene_id "HML2_1p31.1"; transcript_id "HML2_1p31.1"; locus "HML2_1p31.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0007"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_1q21.3 ### chr1 rmsk gene 150632886 150634662 . - . gene_id "HML2_1q21.3"; transcript_id "HML2_1q21.3"; locus "HML2_1q21.3"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0009"; model_cov "1783"; model_pct "23.7"; chr1 rmsk exon 150632886 150634662 15187 - . gene_id "HML2_1q21.3"; transcript_id "HML2_1q21.3"; locus "HML2_1q21.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0009"; repClass "LTR"; repEnd "5563"; repFamily "ERVK"; repLeft "3780"; repStart "-1973"; ### HML2_1q22 ### chr1 rmsk gene 155626666 155635845 . - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0011"; model_cov "7148"; model_pct "94.9"; chr1 rmsk exon 155626666 155627633 8978 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 155627729 155629344 14971 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr1 rmsk exon 155629344 155634877 50700 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr1 rmsk exon 155634878 155635845 8978 - . gene_id "HML2_1q22"; transcript_id "HML2_1q22"; locus "HML2_1q22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0011"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_1q23.3 ### chr1 rmsk gene 160690785 160700016 . + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0012"; model_cov "7209"; model_pct "95.7"; chr1 rmsk exon 160690785 160691753 8986 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1 rmsk exon 160691754 160697338 32110 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "5178"; repFamily "ERVK"; repLeft "-2358"; repStart "-416"; chr1 rmsk exon 160697338 160698953 14352 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr1 rmsk exon 160699048 160700016 8448 + . gene_id "HML2_1q23.3"; transcript_id "HML2_1q23.3"; locus "HML2_1q23.3"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0012"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_1q24.1 ### chr1 rmsk gene 166605366 166611021 . - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0013"; model_cov "3660"; model_pct "48.6"; chr1 rmsk exon 166605366 166606355 7845 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 166606445 166609934 20727 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "3882"; repStart "-89"; chr1 rmsk exon 166609929 166610025 470 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "102"; repFamily "ERVK"; repLeft "7"; repStart "-7434"; chr1 rmsk exon 166610032 166611021 7616 - . gene_id "HML2_1q24.1"; transcript_id "HML2_1q24.1"; locus "HML2_1q24.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0013"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_1q32.2 ### chr1 rmsk gene 207635112 207639291 . - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0014"; model_cov "3184"; model_pct "42.3"; chr1 rmsk exon 207635112 207636074 7708 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 207636165 207637777 13912 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr1 rmsk exon 207637777 207638358 4802 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "4952"; repStart "-2002"; chr1 rmsk exon 207638337 207639291 7029 - . gene_id "HML2_1q32.2"; transcript_id "HML2_1q32.2"; locus "HML2_1q32.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0014"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "1729"; repStart "-4820"; ### HML2_1q43 ### chr1 rmsk gene 238762295 238764473 . - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0015"; model_cov "1101"; model_pct "14.6"; chr1 rmsk exon 238762295 238763288 7387 - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0015"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr1 rmsk exon 238763378 238764473 7000 - . gene_id "HML2_1q43"; transcript_id "HML2_1q43"; locus "HML2_1q43"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0015"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "6346"; repStart "-89"; ### HML2_2q21.1 ### chr2 rmsk gene 129961965 129965044 . - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0016"; model_cov "2023"; model_pct "26.8"; chr2 rmsk exon 129961965 129962925 8380 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr2 rmsk exon 129963021 129964636 14541 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr2 rmsk exon 129964636 129965044 3589 - . gene_id "HML2_2q21.1"; transcript_id "HML2_2q21.1"; locus "HML2_2q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0016"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "5126"; repStart "-2002"; ### HML2_3p25.3 ### chr3 rmsk gene 9847662 9854552 . - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0020"; model_cov "4918"; model_pct "65.3"; chr3 rmsk exon 9847662 9848644 7459 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 9848734 9850354 13139 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "5826"; repStart "-89"; chr3 rmsk exon 9850354 9850938 4633 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "4952"; repStart "-2002"; chr3 rmsk exon 9850917 9853634 21518 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "1"; repStart "-4820"; chr3 rmsk exon 9853635 9854552 6737 - . gene_id "HML2_3p25.3"; transcript_id "HML2_3p25.3"; locus "HML2_3p25.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0020"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_3p12.3 ### chr3 rmsk gene 75551314 75559999 . + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0022"; model_cov "7535"; model_pct "100.0"; chr3 rmsk exon 75551314 75551382 580 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "965"; chr3 rmsk exon 75551383 75558968 37160 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 75558969 75559999 8382 + . gene_id "HML2_3p12.3"; transcript_id "HML2_3p12.3"; locus "HML2_3p12.3"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0022"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_3q12.3 ### chr3 rmsk gene 101691893 101701015 . + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0023"; model_cov "7148"; model_pct "94.9"; chr3 rmsk exon 101691893 101692861 8050 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr3 rmsk exon 101692862 101698340 22220 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1"; chr3 rmsk exon 101698340 101699951 14507 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr3 rmsk exon 101700047 101701015 8320 + . gene_id "HML2_3q12.3"; transcript_id "HML2_3q12.3"; locus "HML2_3q12.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0023"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_3q13.2 ### chr3 rmsk gene 113024277 113033435 . - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0024"; model_cov "7148"; model_pct "94.9"; chr3 rmsk exon 113024277 113025236 9337 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 113025332 113026948 14772 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr3 rmsk exon 113026948 113032475 50828 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr3 rmsk exon 113032476 113033435 9337 - . gene_id "HML2_3q13.2"; transcript_id "HML2_3q13.2"; locus "HML2_3q13.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0024"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_3q21.2 ### chr3 rmsk gene 125890459 125899596 . + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0026"; model_cov "7446"; model_pct "98.8"; chr3 rmsk exon 125890459 125891239 6706 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "789"; repFamily "ERVK"; repLeft "-179"; repStart "1"; chr3 rmsk exon 125891209 125891262 317 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "915"; chr3 rmsk exon 125891263 125898703 63114 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1"; chr3 rmsk exon 125898793 125899573 6625 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "789"; repFamily "ERVK"; repLeft "-179"; repStart "1"; chr3 rmsk exon 125899543 125899596 290 + . gene_id "HML2_3q21.2"; transcript_id "HML2_3q21.2"; locus "HML2_3q21.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0026"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "915"; ### HML2_3q24 ### chr3 rmsk gene 148563690 148567609 . - . gene_id "HML2_3q24"; transcript_id "HML2_3q24"; locus "HML2_3q24"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0028"; model_cov "3918"; model_pct "52.0"; chr3 rmsk exon 148563690 148567609 35394 - . gene_id "HML2_3q24"; transcript_id "HML2_3q24"; locus "HML2_3q24"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0028"; repClass "LTR"; repEnd "3919"; repFamily "ERVK"; repLeft "1"; repStart "-3617"; ### HML2_3q27.2 ### chr3 rmsk gene 185562548 185571727 . - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0029"; model_cov "7148"; model_pct "94.9"; chr3 rmsk exon 185562548 185563515 8924 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr3 rmsk exon 185563611 185565226 14815 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr3 rmsk exon 185565226 185570759 50470 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr3 rmsk exon 185570760 185571727 8884 - . gene_id "HML2_3q27.2"; transcript_id "HML2_3q27.2"; locus "HML2_3q27.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0029"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_4p16.3a ### chr4 rmsk gene 241200 245565 . + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0030"; model_cov "3299"; model_pct "43.8"; chr4 rmsk exon 241200 242201 7488 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "4"; chr4 rmsk exon 242202 242389 1073 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "198"; repFamily "ERVK"; repLeft "-7338"; repStart "1"; chr4 rmsk exon 242385 245212 15829 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "3715"; repFamily "ERVK"; repLeft "-3821"; repStart "873"; chr4 rmsk exon 245308 245565 1656 + . gene_id "HML2_4p16.3a"; transcript_id "HML2_4p16.3a"; locus "HML2_4p16.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0030"; repClass "LTR"; repEnd "3958"; repFamily "ERVK"; repLeft "-3578"; repStart "3698"; ### HML2_4p16.3b ### chr4 rmsk gene 3977324 3986912 . - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0031"; model_cov "7535"; model_pct "100.0"; chr4 rmsk exon 3977324 3978367 8576 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 3978368 3985909 45400 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 3985910 3986912 8316 - . gene_id "HML2_4p16.3b"; transcript_id "HML2_4p16.3b"; locus "HML2_4p16.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0031"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_4p16.1a ### chr4 rmsk gene 9121786 9131367 . + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0034"; model_cov "7446"; model_pct "98.8"; chr4 rmsk exon 9121786 9122809 8752 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 9122810 9130255 44130 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1"; chr4 rmsk exon 9130345 9131367 8342 + . gene_id "HML2_4p16.1a"; transcript_id "HML2_4p16.1a"; locus "HML2_4p16.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0034"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_4p16.1b ### chr4 rmsk gene 9657956 9667550 . + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0036"; model_cov "7447"; model_pct "98.8"; chr4 rmsk exon 9657956 9658973 8450 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 9658974 9666434 46859 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "7448"; repFamily "ERVK"; repLeft "-88"; repStart "1"; chr4 rmsk exon 9666525 9667550 8382 + . gene_id "HML2_4p16.1b"; transcript_id "HML2_4p16.1b"; locus "HML2_4p16.1b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0036"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_4q13.2 ### chr4 rmsk gene 68597991 68603505 . + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0037"; model_cov "3562"; model_pct "47.3"; chr4 rmsk exon 68597991 68598948 6942 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "955"; repFamily "ERVK"; repLeft "-78"; repStart "1"; chr4 rmsk exon 68598949 68602490 20320 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "7511"; repFamily "ERVK"; repLeft "-25"; repStart "3949"; chr4 rmsk exon 68602500 68603505 7736 + . gene_id "HML2_4q13.2"; transcript_id "HML2_4q13.2"; locus "HML2_4q13.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0037"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_4q32.1 ### chr4 rmsk gene 160658786 160660924 . + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0038"; model_cov "1186"; model_pct "15.7"; chr4 rmsk exon 160658786 160659753 8801 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 160659754 160660025 2390 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "272"; repFamily "ERVK"; repLeft "-7264"; repStart "1"; chr4 rmsk exon 160660008 160660924 8165 + . gene_id "HML2_4q32.1"; transcript_id "HML2_4q32.1"; locus "HML2_4q32.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0038"; repClass "LTR"; repEnd "1338"; repFamily "ERVK"; repLeft "-6198"; repStart "423"; ### HML2_4q32.3 ### chr4 rmsk gene 164995688 165002916 . + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0040"; model_cov "4910"; model_pct "65.2"; chr4 rmsk exon 164995688 164996655 7694 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr4 rmsk exon 164996656 164999353 21428 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "-4820"; repStart "1"; chr4 rmsk exon 164999332 164999426 2771 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5043"; repFamily "ERVK"; repLeft "-2493"; repStart "4952"; chr4 rmsk exon 164999735 165000000 2771 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5301"; repFamily "ERVK"; repLeft "-2235"; repStart "5044"; chr4 rmsk exon 165000001 165000233 1948 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5302"; chr4 rmsk exon 165000233 165001857 13233 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr4 rmsk exon 165001953 165002916 7826 + . gene_id "HML2_4q32.3"; transcript_id "HML2_4q32.3"; locus "HML2_4q32.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0040"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_4q35.2 ### chr4 rmsk gene 190106259 190113546 . - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0041"; model_cov "4984"; model_pct "66.1"; chr4 rmsk exon 190106259 190107263 7790 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr4 rmsk exon 190107266 190108168 5549 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "6626"; repStart "-2"; chr4 rmsk exon 190108264 190111540 23124 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "6328"; repFamily "ERVK"; repLeft "3007"; repStart "-1208"; chr4 rmsk exon 190111624 190111683 261 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "820"; repFamily "ERVK"; repLeft "761"; repStart "-6716"; chr4 rmsk exon 190111667 190111959 1729 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "401"; repStart "-6840"; chr4 rmsk exon 190112160 190112541 2323 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "402"; repFamily "ERVK"; repLeft "1"; repStart "-7134"; chr4 rmsk exon 190112542 190113546 7805 - . gene_id "HML2_4q35.2"; transcript_id "HML2_4q35.2"; locus "HML2_4q35.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0041"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "6"; repStart "0"; ### HML2_5p13.3 ### chr5 rmsk gene 30486653 30496098 . - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0042"; model_cov "7440"; model_pct "98.7"; chr5 rmsk exon 30486653 30487612 8378 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 30487708 30495147 66061 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr5 rmsk exon 30495148 30496098 8198 - . gene_id "HML2_5p13.3"; transcript_id "HML2_5p13.3"; locus "HML2_5p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0042"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_5p12 ### chr5 rmsk gene 46000057 46009900 . - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0043"; model_cov "7241"; model_pct "96.1"; chr5 rmsk exon 46000057 46001004 6385 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 46001005 46002716 13121 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "5826"; repStart "0"; chr5 rmsk exon 46002716 46008021 41714 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "217"; repStart "-2002"; chr5 rmsk exon 46008729 46008936 41714 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "216"; repFamily "ERVK"; repLeft "2"; repStart "-7320"; chr5 rmsk exon 46008940 46009900 6205 - . gene_id "HML2_5p12"; transcript_id "HML2_5p12"; locus "HML2_5p12"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0043"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "1"; repStart "-3"; ### HML2_5q33.2 ### chr5 rmsk gene 154635953 154644655 . - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0046"; model_cov "6623"; model_pct "87.9"; chr5 rmsk exon 154635953 154636977 7881 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "-30"; repStart "0"; chr5 rmsk exon 154636980 154640034 20165 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "4466"; repStart "-2"; chr5 rmsk exon 154640032 154642817 16400 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "3553"; repFamily "ERVK"; repLeft "743"; repStart "-3983"; chr5 rmsk exon 154642910 154643647 4615 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "1"; repStart "-6790"; chr5 rmsk exon 154643648 154644655 7899 - . gene_id "HML2_5q33.2"; transcript_id "HML2_5q33.2"; locus "HML2_5q33.2"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0046"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "3"; repStart "0"; ### HML2_5q33.3 ### chr5 rmsk gene 156657706 156666885 . - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0047"; model_cov "7148"; model_pct "94.9"; chr5 rmsk exon 156657706 156658673 8851 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr5 rmsk exon 156658769 156660384 14111 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr5 rmsk exon 156660384 156665917 47612 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr5 rmsk exon 156665918 156666885 8861 - . gene_id "HML2_5q33.3"; transcript_id "HML2_5q33.3"; locus "HML2_5q33.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0047"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_6p22.1 ### chr6 rmsk gene 28682591 28692958 . + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0049"; model_cov "7588"; model_pct "100.0"; chr6 rmsk exon 28682591 28683408 3942 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "189"; chr6 rmsk exon 28683412 28684170 5291 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "776"; repFamily "ERVK"; repLeft "-6760"; repStart "1"; chr6 rmsk exon 28684224 28687381 53735 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "3909"; repFamily "ERVK"; repLeft "-3627"; repStart "722"; chr6 rmsk exon 28687382 28688356 6122 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 28688357 28692010 53735 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "3910"; chr6 rmsk exon 28692011 28692958 5830 + . gene_id "HML2_6p22.1"; transcript_id "HML2_6p22.1"; locus "HML2_6p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0049"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_6p21.1 ### chr6 rmsk gene 42893671 42903629 . - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0050"; model_cov "7529"; model_pct "99.9"; chr6 rmsk exon 42893671 42894666 7663 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 42894674 42900373 42072 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "7524"; repFamily "ERVK"; repLeft "1856"; repStart "-12"; chr6 rmsk exon 42900685 42901811 42072 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1855"; repFamily "ERVK"; repLeft "743"; repStart "-5681"; chr6 rmsk exon 42901891 42902625 4270 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "9"; repStart "-6778"; chr6 rmsk exon 42902633 42903629 7599 - . gene_id "HML2_6p21.1"; transcript_id "HML2_6p21.1"; locus "HML2_6p21.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0050"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_6q11.1 ### chr6 rmsk gene 60654987 60660975 . + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0051"; model_cov "3472"; model_pct "46.1"; chr6 rmsk exon 60654987 60656012 8037 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6 rmsk exon 60656013 60656707 3744 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "-6840"; repStart "1"; chr6 rmsk exon 60656834 60659432 16583 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "5613"; repFamily "ERVK"; repLeft "-1923"; repStart "3007"; chr6 rmsk exon 60659770 60659941 1027 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "7528"; repFamily "ERVK"; repLeft "-8"; repStart "7357"; chr6 rmsk exon 60659956 60660975 7824 + . gene_id "HML2_6q11.1"; transcript_id "HML2_6q11.1"; locus "HML2_6q11.1"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0051"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_6q14.1 ### chr6 rmsk gene 77716945 77726366 . - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0053"; model_cov "7440"; model_pct "98.7"; chr6 rmsk exon 77716945 77717904 8674 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr6 rmsk exon 77718000 77725406 48157 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr6 rmsk exon 77725407 77726366 8726 - . gene_id "HML2_6q14.1"; transcript_id "HML2_6q14.1"; locus "HML2_6q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0053"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_6q25.1 ### chr6 rmsk gene 150859613 150862438 . + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0054"; model_cov "1757"; model_pct "23.3"; chr6 rmsk exon 150859613 150861371 13136 + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0054"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5684"; chr6 rmsk exon 150861466 150862438 6300 + . gene_id "HML2_6q25.1"; transcript_id "HML2_6q25.1"; locus "HML2_6q25.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0054"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_7p22.1 ### chr7 rmsk gene 4582426 4600400 . - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; category "tandem*"; intModel "HERVK-int"; locid "HERVK-int_0055"; model_cov "7440"; model_pct "98.7"; chr7 rmsk exon 4582426 4583393 8941 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 4583489 4590929 68784 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr7 rmsk exon 4590930 4591897 8936 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 4591993 4599432 68780 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr7 rmsk exon 4599433 4600400 8980 - . gene_id "HML2_7p22.1"; transcript_id "HML2_7p22.1"; locus "HML2_7p22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0055"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_7q11.21 ### chr7 rmsk gene 66004684 66007803 . - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0058"; model_cov "2029"; model_pct "26.9"; chr7 rmsk exon 66004684 66005676 8096 - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0058"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr7 rmsk exon 66005766 66007803 11693 - . gene_id "HML2_7q11.21"; transcript_id "HML2_7q11.21"; locus "HML2_7q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0058"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "5418"; repStart "-89"; ### HML2_7q22.2 ### chr7 rmsk gene 104748902 104752819 . - . gene_id "HML2_7q22.2"; transcript_id "HML2_7q22.2"; locus "HML2_7q22.2"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0059"; model_cov "3915"; model_pct "52.0"; chr7 rmsk exon 104748902 104752819 33350 - . gene_id "HML2_7q22.2"; transcript_id "HML2_7q22.2"; locus "HML2_7q22.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0059"; repClass "LTR"; repEnd "3919"; repFamily "ERVK"; repLeft "4"; repStart "-3617"; ### HML2_7q34 ### chr7 rmsk gene 141752118 141756138 . - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0060"; model_cov "3914"; model_pct "51.9"; chr7 rmsk exon 141752118 141755274 25017 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "3918"; repFamily "ERVK"; repLeft "743"; repStart "-3618"; chr7 rmsk exon 141755372 141756103 5407 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "741"; repFamily "ERVK"; repLeft "2"; repStart "-6795"; chr7 rmsk exon 141756105 141756138 282 - . gene_id "HML2_7q34"; transcript_id "HML2_7q34"; locus "HML2_7q34"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0060"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "969"; repStart "0"; ### HML2_8p23.1a ### chr8 rmsk gene 7497875 7502767 . - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0063"; model_cov "3854"; model_pct "51.1"; chr8 rmsk exon 7497875 7498842 8965 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 7498938 7500000 9764 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6379"; repStart "-95"; chr8 rmsk exon 7500001 7502767 56636 - . gene_id "HML2_8p23.1a"; transcript_id "HML2_8p23.1a"; locus "HML2_8p23.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0063"; repClass "LTR"; repEnd "6378"; repFamily "ERVK"; repLeft "3586"; repStart "-1158"; ### HML2_8p23.1b ### chr8 rmsk gene 7502828 7507337 . - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0064"; model_cov "3584"; model_pct "47.6"; chr8 rmsk exon 7502828 7506377 56636 - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0064"; repClass "LTR"; repEnd "6378"; repFamily "ERVK"; repLeft "2794"; repStart "-1158"; chr8 rmsk exon 7506378 7507337 8874 - . gene_id "HML2_8p23.1b"; transcript_id "HML2_8p23.1b"; locus "HML2_8p23.1b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0064"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_8p23.1c ### chr8 rmsk gene 8197178 8206699 . + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0066"; model_cov "7446"; model_pct "98.8"; chr8 rmsk exon 8197178 8198203 8731 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr8 rmsk exon 8198204 8205586 41196 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "1"; chr8 rmsk exon 8205676 8206699 8476 + . gene_id "HML2_8p23.1c"; transcript_id "HML2_8p23.1c"; locus "HML2_8p23.1c"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0066"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_8p23.1d ### chr8 rmsk gene 12216461 12225988 . - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0067"; model_cov "7365"; model_pct "97.7"; chr8 rmsk exon 12216461 12217484 8110 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 12217574 12223144 35557 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1872"; repStart "-89"; chr8 rmsk exon 12223176 12224961 7773 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1893"; repFamily "ERVK"; repLeft "103"; repStart "-5643"; chr8 rmsk exon 12224962 12225988 8788 - . gene_id "HML2_8p23.1d"; transcript_id "HML2_8p23.1d"; locus "HML2_8p23.1d"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0067"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_8p23.1e ### chr8 rmsk gene 12458983 12461064 . - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0068"; model_cov "998"; model_pct "13.2"; chr8 rmsk exon 12458983 12460006 8570 - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0068"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 12460096 12461064 44166 - . gene_id "HML2_8p23.1e"; transcript_id "HML2_8p23.1e"; locus "HML2_8p23.1e"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0068"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "6449"; repStart "-89"; ### HML2_8p23.1f ### chr8 rmsk gene 12461223 12468498 . - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0069"; model_cov "6447"; model_pct "85.5"; chr8 rmsk exon 12461223 12467471 44166 - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0069"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1000"; repStart "-89"; chr8 rmsk exon 12467472 12468498 8725 - . gene_id "HML2_8p23.1f"; transcript_id "HML2_8p23.1f"; locus "HML2_8p23.1f"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0069"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_8p22 ### chr8 rmsk gene 17908096 17916431 . - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0072"; model_cov "7010"; model_pct "93.0"; chr8 rmsk exon 17908096 17912373 17248 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "3280"; repStart "0"; chr8 rmsk exon 17912665 17914948 17248 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "3279"; repFamily "ERVK"; repLeft "966"; repStart "-4257"; chr8 rmsk exon 17915408 17915839 970 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "1"; repStart "-7094"; chr8 rmsk exon 17916217 17916431 252 - . gene_id "HML2_8p22"; transcript_id "HML2_8p22"; locus "HML2_8p22"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0072"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "279"; repStart "-458"; ### HML2_8q11.1a ### chr8 rmsk gene 46264028 46267723 . - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0073"; model_cov "2666"; model_pct "35.4"; chr8 rmsk exon 46264028 46265053 7799 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 46265056 46267136 11384 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "5462"; repStart "-2"; chr8 rmsk exon 46267142 46267723 3196 - . gene_id "HML2_8q11.1a"; transcript_id "HML2_8q11.1a"; locus "HML2_8q11.1a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0073"; repClass "LTR"; repEnd "652"; repFamily "ERVK"; repLeft "58"; repStart "-6884"; ### HML2_8q11.1b ### chr8 rmsk gene 46267760 46272039 . - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0074"; model_cov "5442"; model_pct "72.2"; chr8 rmsk exon 46267760 46271002 15126 - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0074"; repClass "LTR"; repEnd "5476"; repFamily "ERVK"; repLeft "34"; repStart "-2060"; chr8 rmsk exon 46271034 46272039 7285 - . gene_id "HML2_8q11.1b"; transcript_id "HML2_8q11.1b"; locus "HML2_8q11.1b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0074"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_8q24.3a ### chr8 rmsk gene 139459906 139462993 . - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0075"; model_cov "2025"; model_pct "26.9"; chr8 rmsk exon 139459906 139460873 8925 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 139460969 139461717 6940 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6693"; repStart "-95"; chr8 rmsk exon 139461716 139462993 11668 - . gene_id "HML2_8q24.3a"; transcript_id "HML2_8q24.3a"; locus "HML2_8q24.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0075"; repClass "LTR"; repEnd "1278"; repFamily "ERVK"; repLeft "1"; repStart "-6258"; ### HML2_8q24.3b ### chr8 rmsk gene 145021244 145028834 . - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0076"; model_cov "5527"; model_pct "73.3"; chr8 rmsk exon 145021244 145022259 8134 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8 rmsk exon 145022262 145026351 27966 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "3452"; repStart "-2"; chr8 rmsk exon 145026350 145027823 7746 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1446"; repFamily "ERVK"; repLeft "1"; repStart "-6090"; chr8 rmsk exon 145027824 145028834 8116 - . gene_id "HML2_8q24.3b"; transcript_id "HML2_8q24.3b"; locus "HML2_8q24.3b"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0076"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "2"; repStart "0"; ### HML2_9q34.11 ### chr9 rmsk gene 128850236 128857457 . + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0077"; model_cov "7533"; model_pct "100.0"; chr9 rmsk exon 128850236 128851238 7849 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr9 rmsk exon 128851239 128856449 16412 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "-2"; repStart "1"; chr9 rmsk exon 128856452 128857457 7931 + . gene_id "HML2_9q34.11"; transcript_id "HML2_9q34.11"; locus "HML2_9q34.11"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0077"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_9q34.3 ### chr9 rmsk gene 136780314 136789776 . - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0078"; model_cov "5732"; model_pct "76.1"; chr9 rmsk exon 136780314 136781296 6274 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr9 rmsk exon 136781297 136781482 1708 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "7350"; repStart "0"; chr9 rmsk exon 136781788 136781880 1708 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "7349"; repFamily "ERVK"; repLeft "7258"; repStart "-187"; chr9 rmsk exon 136781866 136783596 11943 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "5592"; repFamily "ERVK"; repLeft "3860"; repStart "-1944"; chr9 rmsk exon 136783849 136785013 19279 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "3710"; repFamily "ERVK"; repLeft "2565"; repStart "-3826"; chr9 rmsk exon 136786163 136787981 19279 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "2564"; repFamily "ERVK"; repLeft "743"; repStart "-4972"; chr9 rmsk exon 136788061 136788797 4132 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778"; chr9 rmsk exon 136788798 136789776 6413 - . gene_id "HML2_9q34.3"; transcript_id "HML2_9q34.3"; locus "HML2_9q34.3"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0078"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_10p14 ### chr10 rmsk gene 6824179 6833641 . - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0079"; model_cov "7440"; model_pct "98.7"; chr10 rmsk exon 6824179 6825146 7814 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 6825242 6832673 63906 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr10 rmsk exon 6832674 6833641 7901 - . gene_id "HML2_10p14"; transcript_id "HML2_10p14"; locus "HML2_10p14"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0079"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_10q24.2 ### chr10 rmsk gene 99820812 99827988 . - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0081"; model_cov "6068"; model_pct "80.5"; chr10 rmsk exon 99820812 99821797 8326 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr10 rmsk exon 99821893 99827959 54777 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "6069"; repFamily "ERVK"; repLeft "1"; repStart "-1467"; chr10 rmsk exon 99827960 99827988 254 - . gene_id "HML2_10q24.2"; transcript_id "HML2_10q24.2"; locus "HML2_10q24.2"; repName "LTR5"; geneRegion "ltr"; locid "HERVK-int_0081"; repClass "LTR"; repEnd "969"; repFamily "ERVK"; repLeft "941"; repStart "0"; ### HML2_11p15.4a ### chr11 rmsk gene 3447426 3456979 . - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0082"; model_cov "7535"; model_pct "100.0"; chr11 rmsk exon 3447426 3448449 8563 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 3448450 3455952 47463 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 3455953 3456979 8618 - . gene_id "HML2_11p15.4a"; transcript_id "HML2_11p15.4a"; locus "HML2_11p15.4a"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0082"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_11p15.4b ### chr11 rmsk gene 4459435 4461473 . - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0084"; model_cov "817"; model_pct "10.8"; chr11 rmsk exon 4459435 4459640 1531 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "789"; repStart "0"; chr11 rmsk exon 4459658 4459795 611 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "3010"; repFamily "ERVK"; repLeft "2888"; repStart "-4526"; chr11 rmsk exon 4459781 4460462 4101 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "1"; repStart "-6840"; chr11 rmsk exon 4460468 4461473 8224 - . gene_id "HML2_11p15.4b"; transcript_id "HML2_11p15.4b"; locus "HML2_11p15.4b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0084"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "4"; repStart "0"; ### HML2_11q12.1 ### chr11 rmsk gene 59000009 59005723 . + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0085"; model_cov "5004"; model_pct "66.4"; chr11 rmsk exon 59000009 59000147 654 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "-6840"; repStart "559"; chr11 rmsk exon 59000270 59002749 13680 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "5434"; repFamily "ERVK"; repLeft "-2102"; repStart "2427"; chr11 rmsk exon 59002774 59004639 10154 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5587"; chr11 rmsk exon 59004729 59005723 7568 + . gene_id "HML2_11q12.1"; transcript_id "HML2_11q12.1"; locus "HML2_11q12.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0085"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_11q12.3a ### chr11 rmsk gene 62368491 62370999 . - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0086"; model_cov "1457"; model_pct "19.3"; chr11 rmsk exon 62368491 62369451 5940 - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0086"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 62369545 62370999 11630 - . gene_id "HML2_11q12.3a"; transcript_id "HML2_11q12.3a"; locus "HML2_11q12.3a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0086"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5984"; repStart "-95"; ### HML2_11q12.3b ### chr11 rmsk gene 62375545 62383091 . - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0087"; model_cov "6011"; model_pct "79.8"; chr11 rmsk exon 62375545 62375829 42079 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "5998"; repFamily "ERVK"; repLeft "5718"; repStart "-1538"; chr11 rmsk exon 62376126 62381099 42079 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "5717"; repFamily "ERVK"; repLeft "743"; repStart "-1819"; chr11 rmsk exon 62381171 62381929 5179 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778"; chr11 rmsk exon 62381930 62382006 5110 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "892"; repStart "0"; chr11 rmsk exon 62382200 62383091 5294 - . gene_id "HML2_11q12.3b"; transcript_id "HML2_11q12.3b"; locus "HML2_11q12.3b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0087"; repClass "LTR"; repEnd "891"; repFamily "ERVK"; repLeft "-33"; repStart "-77"; ### HML2_11q22.1 ### chr11 rmsk gene 101695063 101704528 . + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0091"; model_cov "7439"; model_pct "98.7"; chr11 rmsk exon 101695063 101696030 8870 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr11 rmsk exon 101696031 101699581 62466 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "3583"; repFamily "ERVK"; repLeft "-3953"; repStart "1"; chr11 rmsk exon 101699645 101703465 62466 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "3584"; chr11 rmsk exon 101703561 101704528 8897 + . gene_id "HML2_11q22.1"; transcript_id "HML2_11q22.1"; locus "HML2_11q22.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0091"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_11q23.3 ### chr11 rmsk gene 118721015 118730174 . - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0092"; model_cov "7243"; model_pct "96.1"; chr11 rmsk exon 118721015 118721981 8482 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr11 rmsk exon 118721982 118723687 14138 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "5826"; repStart "0"; chr11 rmsk exon 118723687 118729206 48710 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "1"; repStart "-2002"; chr11 rmsk exon 118729207 118730174 8460 - . gene_id "HML2_11q23.3"; transcript_id "HML2_11q23.3"; locus "HML2_11q23.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0092"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_12p11.1 ### chr12 rmsk gene 34619620 34629282 . - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0093"; model_cov "7199"; model_pct "95.5"; chr12 rmsk exon 34619620 34620533 4503 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 34620629 34621290 5119 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "6780"; repStart "-95"; chr12 rmsk exon 34621720 34627344 41180 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "6777"; repFamily "ERVK"; repLeft "1130"; repStart "-759"; chr12 rmsk exon 34627339 34627473 876 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "877"; repFamily "ERVK"; repLeft "743"; repStart "-6659"; chr12 rmsk exon 34627553 34628301 4435 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778"; chr12 rmsk exon 34628302 34629282 5536 - . gene_id "HML2_12p11.1"; transcript_id "HML2_12p11.1"; locus "HML2_12p11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0093"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "6"; repStart "0"; ### HML2_12q14.1 ### chr12 rmsk gene 58327459 58336915 . - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0094"; model_cov "7440"; model_pct "98.7"; chr12 rmsk exon 58327459 58328426 8871 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 58328522 58335947 49293 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "1"; repStart "-95"; chr12 rmsk exon 58335948 58336915 8873 - . gene_id "HML2_12q14.1"; transcript_id "HML2_12q14.1"; locus "HML2_12q14.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0094"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_12q24.33 ### chr12 rmsk gene 133090536 133096478 . - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0097"; model_cov "2905"; model_pct "38.5"; chr12 rmsk exon 133090536 133091545 8594 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr12 rmsk exon 133091560 133093500 12073 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "7522"; repFamily "ERVK"; repLeft "5587"; repStart "-14"; chr12 rmsk exon 133093506 133093784 2003 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "5187"; repStart "-2074"; chr12 rmsk exon 133093979 133095471 4356 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "1"; repStart "-6840"; chr12 rmsk exon 133095472 133096478 8541 - . gene_id "HML2_12q24.33"; transcript_id "HML2_12q24.33"; locus "HML2_12q24.33"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0097"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_14q11.2 ### chr14 rmsk gene 24009696 24015776 . - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0099"; model_cov "3838"; model_pct "50.9"; chr14 rmsk exon 24009696 24010720 8164 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr14 rmsk exon 24010723 24010906 1116 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "7351"; repStart "-2"; chr14 rmsk exon 24011391 24015051 21036 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "3656"; repFamily "ERVK"; repLeft "1"; repStart "-3880"; chr14 rmsk exon 24015052 24015776 5820 - . gene_id "HML2_14q11.2"; transcript_id "HML2_14q11.2"; locus "HML2_14q11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0099"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "308"; repStart "0"; ### HML2_14q32.33 ### chr14 rmsk gene 105673313 105676203 . + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0100"; model_cov "1886"; model_pct "25.0"; chr14 rmsk exon 105673313 105675001 11016 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "3766"; chr14 rmsk exon 105675007 105675106 414 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "5686"; repFamily "ERVK"; repLeft "-1850"; repStart "5587"; chr14 rmsk exon 105675105 105675196 575 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "7532"; repFamily "ERVK"; repLeft "-4"; repStart "7441"; chr14 rmsk exon 105675200 105676203 8253 + . gene_id "HML2_14q32.33"; transcript_id "HML2_14q32.33"; locus "HML2_14q32.33"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0100"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_15q25.2 ### chr15 rmsk gene 84160268 84163612 . + . gene_id "HML2_15q25.2"; transcript_id "HML2_15q25.2"; locus "HML2_15q25.2"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0101"; model_cov "3522"; model_pct "46.7"; chr15 rmsk exon 84160268 84163612 11857 + . gene_id "HML2_15q25.2"; transcript_id "HML2_15q25.2"; locus "HML2_15q25.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0101"; repClass "LTR"; repEnd "6330"; repFamily "ERVK"; repLeft "-1206"; repStart "2808"; ### HML2_16p11.2a ### chr16 rmsk gene 34412057 34414804 . - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0104"; model_cov "1692"; model_pct "22.5"; chr16 rmsk exon 34412057 34413016 8716 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr16 rmsk exon 34413112 34414727 14823 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr16 rmsk exon 34414727 34414804 602 - . gene_id "HML2_16p11.2a"; transcript_id "HML2_16p11.2a"; locus "HML2_16p11.2a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0104"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "5457"; repStart "-2002"; ### HML2_16p11.2b ### chr16 rmsk gene 34997026 34999771 . + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0105"; model_cov "1692"; model_pct "22.5"; chr16 rmsk exon 34997026 34997103 600 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "5457"; chr16 rmsk exon 34997103 34998718 14851 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr16 rmsk exon 34998814 34999771 9064 + . gene_id "HML2_16p11.2b"; transcript_id "HML2_16p11.2b"; locus "HML2_16p11.2b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0105"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_17p13.1 ### chr17 rmsk gene 8056337 8063901 . + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0107"; model_cov "6060"; model_pct "80.4"; chr17 rmsk exon 8056337 8056551 407 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "510"; repFamily "ERVK"; repLeft "-458"; repStart "279"; chr17 rmsk exon 8057039 8057470 1171 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "442"; repFamily "ERVK"; repLeft "-7094"; repStart "1"; chr17 rmsk exon 8057909 8058482 11977 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "1551"; repFamily "ERVK"; repLeft "-5985"; repStart "966"; chr17 rmsk exon 8058796 8061901 11977 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "4676"; repFamily "ERVK"; repLeft "-2860"; repStart "1552"; chr17 rmsk exon 8062292 8063901 2161 + . gene_id "HML2_17p13.1"; transcript_id "HML2_17p13.1"; locus "HML2_17p13.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0107"; repClass "LTR"; repEnd "6588"; repFamily "ERVK"; repLeft "-948"; repStart "4678"; ### HML2_19p13.3 ### chr19 rmsk gene 385095 387637 . + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0109"; model_cov "1491"; model_pct "19.8"; chr19 rmsk exon 385095 386584 12032 + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0109"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5950"; chr19 rmsk exon 386680 387637 8361 + . gene_id "HML2_19p13.3"; transcript_id "HML2_19p13.3"; locus "HML2_19p13.3"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0109"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_19p12a ### chr19 rmsk gene 20276591 20286703 . + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0110"; model_cov "7444"; model_pct "98.8"; chr19 rmsk exon 20276591 20277574 6327 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr19 rmsk exon 20277575 20278301 5156 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1"; chr19 rmsk exon 20278394 20282633 41844 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "4994"; repFamily "ERVK"; repLeft "-2542"; repStart "743"; chr19 rmsk exon 20282931 20284402 41844 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "6447"; repFamily "ERVK"; repLeft "-1089"; repStart "4995"; chr19 rmsk exon 20284741 20285656 3635 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "6445"; chr19 rmsk exon 20285752 20286703 5747 + . gene_id "HML2_19p12a"; transcript_id "HML2_19p12a"; locus "HML2_19p12a"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0110"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "1"; ### HML2_19p12b ### chr19 rmsk gene 22575022 22581759 . + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0111"; model_cov "4920"; model_pct "65.3"; chr19 rmsk exon 22575022 22575897 6995 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "83"; chr19 rmsk exon 22575898 22578608 22553 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "2716"; repFamily "ERVK"; repLeft "-4820"; repStart "1"; chr19 rmsk exon 22578587 22579173 4900 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "5536"; repFamily "ERVK"; repLeft "-2000"; repStart "4952"; chr19 rmsk exon 22579171 22580702 8329 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5826"; chr19 rmsk exon 22580792 22581759 7910 + . gene_id "HML2_19p12b"; transcript_id "HML2_19p12b"; locus "HML2_19p12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0111"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_19q11 ### chr19 rmsk gene 27637590 27646453 . - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0112"; model_cov "7438"; model_pct "98.7"; chr19 rmsk exon 27637590 27638584 8676 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19 rmsk exon 27638680 27641547 63870 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "4584"; repStart "-95"; chr19 rmsk exon 27641861 27646453 63870 - . gene_id "HML2_19q11"; transcript_id "HML2_19q11"; locus "HML2_19q11"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0112"; repClass "LTR"; repEnd "4583"; repFamily "ERVK"; repLeft "2"; repStart "-2953"; ### HML2_19q13.12a ### chr19 rmsk gene 35572527 35576532 . - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0113"; model_cov "3681"; model_pct "48.8"; chr19 rmsk exon 35572527 35575603 24890 - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0113"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "4362"; repStart "-89"; chr19 rmsk exon 35575937 35576532 4594 - . gene_id "HML2_19q13.12a"; transcript_id "HML2_19q13.12a"; locus "HML2_19q13.12a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0113"; repClass "LTR"; repEnd "2957"; repFamily "ERVK"; repLeft "2361"; repStart "-4579"; ### HML2_19q13.12b ### chr19 rmsk gene 37106647 37116164 . - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0114"; model_cov "7454"; model_pct "98.9"; chr19 rmsk exon 37106647 37107600 5785 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "5"; repStart "0"; chr19 rmsk exon 37107697 37114371 40845 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "744"; repStart "-95"; chr19 rmsk exon 37114452 37115196 5138 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "1"; repStart "-6778"; chr19 rmsk exon 37115197 37116164 6571 - . gene_id "HML2_19q13.12b"; transcript_id "HML2_19q13.12b"; locus "HML2_19q13.12b"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0114"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_19q13.41a ### chr19 rmsk gene 52745023 52748339 . - . gene_id "HML2_19q13.41a"; transcript_id "HML2_19q13.41a"; locus "HML2_19q13.41a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0115"; model_cov "5405"; model_pct "71.7"; chr19 rmsk exon 52745023 52748339 26124 - . gene_id "HML2_19q13.41a"; transcript_id "HML2_19q13.41a"; locus "HML2_19q13.41a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0115"; repClass "LTR"; repEnd "6681"; repFamily "ERVK"; repLeft "1276"; repStart "-855"; ### HML2_19q13.41b ### chr19 rmsk gene 52748422 52750454 . - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0116"; model_cov "1362"; model_pct "18.1"; chr19 rmsk exon 52748422 52748830 26124 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "6681"; repFamily "ERVK"; repLeft "6013"; repStart "-855"; chr19 rmsk exon 52748809 52749491 4464 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "696"; repFamily "ERVK"; repLeft "2"; repStart "-6840"; chr19 rmsk exon 52749493 52750454 5671 - . gene_id "HML2_19q13.41b"; transcript_id "HML2_19q13.41b"; locus "HML2_19q13.41b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0116"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "5"; repStart "0"; ### HML2_19q13.42 ### chr19 rmsk gene 53359095 53364791 . + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0117"; model_cov "3616"; model_pct "48.0"; chr19 rmsk exon 53359095 53360013 28625 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "4740"; repFamily "ERVK"; repLeft "-2796"; repStart "3824"; chr19 rmsk exon 53361020 53363705 28625 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "4741"; chr19 rmsk exon 53363801 53364791 6549 + . gene_id "HML2_19q13.42"; transcript_id "HML2_19q13.42"; locus "HML2_19q13.42"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0117"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_20q11.22 ### chr20 rmsk gene 34127754 34136578 . + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0120"; model_cov "4785"; model_pct "63.5"; chr20 rmsk exon 34127754 34128531 5764 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1001"; repFamily "ERVK"; repLeft "-1"; repStart "220"; chr20 rmsk exon 34128532 34129076 4425 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "556"; repFamily "ERVK"; repLeft "-6980"; repStart "1"; chr20 rmsk exon 34129382 34129595 4425 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "758"; repFamily "ERVK"; repLeft "-6778"; repStart "557"; chr20 rmsk exon 34129673 34130246 3702 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1325"; repFamily "ERVK"; repLeft "-6211"; repStart "743"; chr20 rmsk exon 34130235 34131782 12082 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "5190"; repFamily "ERVK"; repLeft "-2346"; repStart "3636"; chr20 rmsk exon 34133703 34135592 14111 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "7535"; repFamily "ERVK"; repLeft "-1"; repStart "5642"; chr20 rmsk exon 34135594 34136578 5656 + . gene_id "HML2_20q11.22"; transcript_id "HML2_20q11.22"; locus "HML2_20q11.22"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0120"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_21q21.1 ### chr21 rmsk gene 18561341 18569644 . - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0121"; model_cov "6986"; model_pct "92.7"; chr21 rmsk exon 18561341 18561597 2222 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "257"; repFamily "ERVK"; repLeft "1"; repStart "-711"; chr21 rmsk exon 18561693 18563304 14060 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "5826"; repStart "-95"; chr21 rmsk exon 18563304 18568678 45482 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "163"; repStart "-2002"; chr21 rmsk exon 18568679 18569644 8533 - . gene_id "HML2_21q21.1"; transcript_id "HML2_21q21.1"; locus "HML2_21q21.1"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0121"; repClass "LTR"; repEnd "966"; repFamily "ERVK"; repLeft "1"; repStart "-2"; ### HML2_22q11.21 ### chr22 rmsk gene 18938674 18947848 . + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0122"; model_cov "7154"; model_pct "94.9"; chr22 rmsk exon 18938674 18939641 9026 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr22 rmsk exon 18939642 18945174 43432 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1"; chr22 rmsk exon 18945174 18946795 13254 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "5826"; chr22 rmsk exon 18946885 18947848 8954 + . gene_id "HML2_22q11.21"; transcript_id "HML2_22q11.21"; locus "HML2_22q11.21"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0122"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_22q11.23 ### chr22 rmsk gene 23536062 23546900 . + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0123"; model_cov "7693"; model_pct "100.0"; chr22 rmsk exon 23536062 23537026 6743 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "964"; repFamily "ERVK"; repLeft "-4"; repStart "1"; chr22 rmsk exon 23537028 23537189 1108 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "163"; repFamily "ERVK"; repLeft "-7373"; repStart "1"; chr22 rmsk exon 23537190 23537250 437 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "942"; chr22 rmsk exon 23537740 23538729 7295 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr22 rmsk exon 23538730 23546008 30409 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "7267"; repFamily "ERVK"; repLeft "-269"; repStart "1"; chr22 rmsk exon 23546306 23546576 30409 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "7533"; repFamily "ERVK"; repLeft "-3"; repStart "7268"; chr22 rmsk exon 23546582 23546900 2050 + . gene_id "HML2_22q11.23"; transcript_id "HML2_22q11.23"; locus "HML2_22q11.23"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0123"; repClass "LTR"; repEnd "331"; repFamily "ERVK"; repLeft "-671"; repStart "1"; ### HML2_Xq11.1 ### chrX rmsk gene 62740079 62742584 . + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0125"; model_cov "2423"; model_pct "32.2"; chrX rmsk exon 62740079 62740554 2893 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "4986"; chrX rmsk exon 62740560 62742508 10851 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "7534"; repFamily "ERVK"; repLeft "-2"; repStart "5587"; chrX rmsk exon 62742511 62742584 630 + . gene_id "HML2_Xq11.1"; transcript_id "HML2_Xq11.1"; locus "HML2_Xq11.1"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0125"; repClass "LTR"; repEnd "74"; repFamily "ERVK"; repLeft "-928"; repStart "1"; ### HML2_Xq12 ### chrX rmsk gene 66464290 66466342 . - . gene_id "HML2_Xq12"; transcript_id "HML2_Xq12"; locus "HML2_Xq12"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0126"; model_cov "2058"; model_pct "27.3"; chrX rmsk exon 66464290 66466342 13660 - . gene_id "HML2_Xq12"; transcript_id "HML2_Xq12"; locus "HML2_Xq12"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0126"; repClass "LTR"; repEnd "5139"; repFamily "ERVK"; repLeft "3081"; repStart "-2397"; ### HML2_Xq28a ### chrX rmsk gene 154588662 154591282 . + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0127"; model_cov "805"; model_pct "10.7"; chrX rmsk exon 154588662 154589649 8253 + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0127"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chrX rmsk exon 154589650 154591282 4975 + . gene_id "HML2_Xq28a"; transcript_id "HML2_Xq28a"; locus "HML2_Xq28a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0127"; repClass "LTR"; repEnd "3812"; repFamily "ERVK"; repLeft "-3724"; repStart "3007"; ### HML2_Xq28b ### chrX rmsk gene 154608423 154615762 . - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0128"; model_cov "7445"; model_pct "98.8"; chrX rmsk exon 154608423 154609415 8174 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrX rmsk exon 154609505 154614774 22434 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "2"; repStart "-89"; chrX rmsk exon 154614775 154615762 8243 - . gene_id "HML2_Xq28b"; transcript_id "HML2_Xq28b"; locus "HML2_Xq28b"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0128"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_Yp11.2 ### chrY rmsk gene 6958400 6965343 . - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0129"; model_cov "5908"; model_pct "78.4"; chrY rmsk exon 6958400 6959413 7973 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "LTR5A"; geneRegion "ltr"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "1033"; repFamily "ERVK"; repLeft "1"; repStart "0"; chrY rmsk exon 6959419 6963041 24065 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "7531"; repFamily "ERVK"; repLeft "3912"; repStart "-5"; chrY rmsk exon 6963034 6965343 11787 - . gene_id "HML2_Yp11.2"; transcript_id "HML2_Yp11.2"; locus "HML2_Yp11.2"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0129"; repClass "LTR"; repEnd "2820"; repFamily "ERVK"; repLeft "531"; repStart "-4716"; ### HML2_Yq11.23a ### chrY rmsk gene 24251690 24254888 . - . gene_id "HML2_Yq11.23a"; transcript_id "HML2_Yq11.23a"; locus "HML2_Yq11.23a"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0130"; model_cov "3385"; model_pct "44.9"; chrY rmsk exon 24251690 24254888 11436 - . gene_id "HML2_Yq11.23a"; transcript_id "HML2_Yq11.23a"; locus "HML2_Yq11.23a"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0130"; repClass "LTR"; repEnd "6193"; repFamily "ERVK"; repLeft "2808"; repStart "-1343"; ### HML2_Yq11.23b ### chrY rmsk gene 25415255 25418454 . + . gene_id "HML2_Yq11.23b"; transcript_id "HML2_Yq11.23b"; locus "HML2_Yq11.23b"; category "internal"; intModel "HERVK-int"; locid "HERVK-int_0131"; model_cov "3385"; model_pct "44.9"; chrY rmsk exon 25415255 25418454 11433 + . gene_id "HML2_Yq11.23b"; transcript_id "HML2_Yq11.23b"; locus "HML2_Yq11.23b"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0131"; repClass "LTR"; repEnd "6193"; repFamily "ERVK"; repLeft "-1343"; repStart "2808"; ### HML2_1_KI270766v1_alt ### chr1_KI270766v1_alt rmsk gene 150436 159977 . + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0132"; model_cov "7448"; model_pct "98.8"; chr1_KI270766v1_alt rmsk exon 150436 151426 7851 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr1_KI270766v1_alt rmsk exon 151428 152160 4512 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "2"; chr1_KI270766v1_alt rmsk exon 152253 158890 20253 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "-89"; repStart "743"; chr1_KI270766v1_alt rmsk exon 158980 159977 8041 + . gene_id "HML2_1_KI270766v1_alt"; transcript_id "HML2_1_KI270766v1_alt"; locus "HML2_1_KI270766v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0132"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_6_GL000251v2_alt ### chr6_GL000251v2_alt rmsk gene 172412 182779 . + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; category "unknown"; intModel "HERVK-int"; locid "HERVK-int_0134"; model_cov "7558"; model_pct "100.0"; chr6_GL000251v2_alt rmsk exon 172412 173229 3560 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "965"; repFamily "ERVK"; repLeft "-3"; repStart "189"; chr6_GL000251v2_alt rmsk exon 173233 173967 4885 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "746"; repFamily "ERVK"; repLeft "-6790"; repStart "1"; chr6_GL000251v2_alt rmsk exon 174045 177202 50015 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "3909"; repFamily "ERVK"; repLeft "-3627"; repStart "722"; chr6_GL000251v2_alt rmsk exon 177203 178177 5650 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; chr6_GL000251v2_alt rmsk exon 178178 181831 50015 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "7536"; repFamily "ERVK"; repLeft "0"; repStart "3910"; chr6_GL000251v2_alt rmsk exon 181832 182779 5423 + . gene_id "HML2_6_GL000251v2_alt"; transcript_id "HML2_6_GL000251v2_alt"; locus "HML2_6_GL000251v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0134"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_8_KI270813v1_alt(a) ### chr8_KI270813v1_alt rmsk gene 180978 185867 . - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0136"; model_cov "3848"; model_pct "51.1"; chr8_KI270813v1_alt rmsk exon 180978 181945 8834 - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0136"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr8_KI270813v1_alt rmsk exon 182041 185867 63496 - . gene_id "HML2_8_KI270813v1_alt(a)"; transcript_id "HML2_8_KI270813v1_alt(a)"; locus "HML2_8_KI270813v1_alt(a)"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0136"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "3593"; repStart "-95"; ### HML2_8_KI270813v1_alt(b) ### chr8_KI270813v1_alt rmsk gene 185912 190440 . - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0137"; model_cov "3591"; model_pct "47.7"; chr8_KI270813v1_alt rmsk exon 185912 189480 63496 - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0137"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "3850"; repStart "-95"; chr8_KI270813v1_alt rmsk exon 189481 190440 8730 - . gene_id "HML2_8_KI270813v1_alt(b)"; transcript_id "HML2_8_KI270813v1_alt(b)"; locus "HML2_8_KI270813v1_alt(b)"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0137"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_14_KI270846v1_alt ### chr14_KI270846v1_alt rmsk gene 141082 143972 . + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0138"; model_cov "1886"; model_pct "25.0"; chr14_KI270846v1_alt rmsk exon 141082 142770 11016 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "5462"; repFamily "ERVK"; repLeft "-2074"; repStart "3766"; chr14_KI270846v1_alt rmsk exon 142776 142875 414 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "5686"; repFamily "ERVK"; repLeft "-1850"; repStart "5587"; chr14_KI270846v1_alt rmsk exon 142874 142965 575 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "7532"; repFamily "ERVK"; repLeft "-4"; repStart "7441"; chr14_KI270846v1_alt rmsk exon 142969 143972 8253 + . gene_id "HML2_14_KI270846v1_alt"; transcript_id "HML2_14_KI270846v1_alt"; locus "HML2_14_KI270846v1_alt"; repName "LTR5B"; geneRegion "ltr"; locid "HERVK-int_0138"; repClass "LTR"; repEnd "1002"; repFamily "ERVK"; repLeft "0"; repStart "1"; ### HML2_19_GL383575v2_alt ### chr19_GL383575v2_alt rmsk gene 10454 19925 . - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; category "prototype"; intModel "HERVK-int"; locid "HERVK-int_0139"; model_cov "7446"; model_pct "98.8"; chr19_GL383575v2_alt rmsk exon 10454 11421 8772 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; chr19_GL383575v2_alt rmsk exon 11511 18957 64100 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "7447"; repFamily "ERVK"; repLeft "1"; repStart "-89"; chr19_GL383575v2_alt rmsk exon 18958 19925 8778 - . gene_id "HML2_19_GL383575v2_alt"; transcript_id "HML2_19_GL383575v2_alt"; locus "HML2_19_GL383575v2_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0139"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "1"; repStart "0"; ### HML2_19_GL383576v1_alt ### chr19_GL383576v1_alt rmsk gene 69114 77314 . + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; category "oneside"; intModel "HERVK-int"; locid "HERVK-int_0140"; model_cov "7148"; model_pct "94.9"; chr19_GL383576v1_alt rmsk exon 69114 74636 50491 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "5534"; repFamily "ERVK"; repLeft "-2002"; repStart "1"; chr19_GL383576v1_alt rmsk exon 74636 76251 14968 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "HERVK-int"; geneRegion "internal"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "7441"; repFamily "ERVK"; repLeft "-95"; repStart "5826"; chr19_GL383576v1_alt rmsk exon 76347 77314 9262 + . gene_id "HML2_19_GL383576v1_alt"; transcript_id "HML2_19_GL383576v1_alt"; locus "HML2_19_GL383576v1_alt"; repName "LTR5_Hs"; geneRegion "ltr"; locid "HERVK-int_0140"; repClass "LTR"; repEnd "968"; repFamily "ERVK"; repLeft "0"; repStart "1";